LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa6g2225	ATGGTTTCTTTTTTAAGAAAGTTAAGAACTTCTTCTGTTCCTCCTATGGAAACAGAAGACAGCATTAGTGGTAGTAGTAACTTTGAATATTCTTTTGCTGTTGTTTACACTGGTCCTCCTCTTAATCATTCAATCCCTGAAATCCCTACTTTCAAAATTGATCAAGTTCCAATTGCATCTGTAGCTCCTTCTCTTTCTCATGATTTCAATGTACCTGTTATTCAACCACTTGGTAAACTTCATCACAGAAATAAGCTCAAACACAAAAGAACAACTTCAGATTCTACTGTTTATCCTAATTTAGAATCTGATGTAGTTGAAATTGAAGCATCAAAAAGTGATGTTCATGTTCATGTTCATGTTCATGTTGATTTGAATGAGAATAAGAATGAGGATGGAGTTGTTGATGATGTTCCTACAAATTCTGATACAAAAGAATCAGGTTCTGGTTTAGGTATAGGGTTTAGGACTTCTGAGATTTGTTCAATAAGTGAAGAAGAAGAAGAAGAAGAAACAGTTAAAACAAAACATGTTAAACATCCTTCAGCGGTTACATTCTGCGACCCCGAATCGAATTGCGTGGTAGAAATCGAAAGTGATGAGTTTTTTGATTCTCGCAATGTAAGTGTACCTGTGAAGGCACATGCAATTAGACCAGGAAAAAAAGGGTCTTGTTATAAGTGTTTCAGAGGGAATAGTTTAACTGAGAGAGAGGTTTGTATTGTTTGTAATGCAAAGTATTGTAGATACTGTGTGATAAGAGCAATGGGATCGATGCCGGAAGGAAGGAAATGTGTCGATTGCATTGGTTATGGAATCGATGAGAGTAAAAGAAGCAAGCTTGGCAAGTGTTCTAGGATGATGAAACAGTTGTTGTCTGAGACTATTGTGGATCAAATTATGGAAGCTGAAAGGCTTTGTGAAGCTAATCAAATTCCACCTGAGCTCGTTCAAGTTAACTCGCAAAGACTTAATCGAGAACAACTTAAGTTGTTGCTTCATTGTGATCATCCTCCGAAAGATCTTAAACCGGGATCTTATTGGTATGATAAAGCTTCTGGATTTTGGGGAAAGAAAGGTCAACCACCTTGTGAAATTATCAGCCCCCGGTTGGACGTTGGCGGTCGTTTGGAGAAAAATGCAAGCCACGGAAACACAAACGTGATGATAAATGATCGCGTGATTACTAAAAAAGAGATGTTGATACTAAAGATGGCAGGAGTACCATGTGAAGGAACTCCACACTTTTGGGTTAATCCTGATGGATCGTACCGCGAAGAAGGACAAAAGAACGACAGAGGATTCATATGGGACAAGGTTGGAACAAAGGTTGCTTGTGCTATTCTGTCACTGCCAGTTCCTTCAAAGTCTGCGCTTCTTAACGATGAAGTTGAAACAGCTAAGAAACTCGGCCTTCATAAAAAGAAACTTCAAAATATGTTACTCGTCGGTTGTGTCAATTCTGGAGCATGCACTATATTTAAACAGGCCAAGCTTTTATATAATGCTCCTTTCTCCGAAAATGAGCTTCAAAATATCAAGTTGGTGATTCAAAGCAACCTGTTTACCTACCTTGGTATACTTCTGGAGGCGCGTGAAGATTTCGAAGAAGATAGTTTGCTAGAAAATAGGAAAAGATTGCCTTCTGATGAATCCACATCATCCGGTGAAAATGTTGATACAACAACACCCTATTCAATTGGACAAAGACTGAAAGGTTTCTCGGATTGGTTACTCAAATGCATGCTGTCAGGTAACATGGATGCAATATTTCCAGCTGCTATACGCGAATACGGGCCAATGGTAGAGGAGTTGTGGAGGAACGAGGCGATTCAAGCGACATACAACAGGAGAAATGAACTAAAAACACTACCTAGAAGTGCAAACTATTTTCTAGACAGGGCTATTGAAATTTCGAAGATAGATTACGAACCCTCTGATATGGACATCTTATATGCCGAGGGGATGTCGTTACCGAACAGCCTCACATCAATGGAATTTTCATTTCCAAAGTCAAGCAGAGAGGAGTCTTTGCATCCCGACTATCAACACGATTCTTCTCTCAGATATCAACTCATTCGAGTACATCATAAAAATCTTGGAGCAAACTGCAAGTTCTTGGAGATGTTCGAAGACACCGATGTCATTTTGTTCTCAGTCTCGTTAACCGACTATGACGAGTACATTGTAGACAGCAAAGGAGTTTCTACAAACAAAATGTTGGCATCGAAAAACCTATTTGAAAACATCATCGATCATCCGAGTTTCAAGAAGAAGAAATTTGTTTTGATACTCACCAAATTTGATCTTCTAGAGGAAAAGATTGAACATGTTCCACTAAAAAAGTGTGAATGGTTTTCTGACTTCAATCCAGTTACAAGTCACAATAACAAAAGAAGTGGTAATGGTAACAATGGAACTACGCCATCATTAGCTCAAAGTGCTTTTCAATACATTGCTATCAAGTTTAAGAGATTGTTCCATTCTTTCACAGAAAGAATTCTATTCGTTTCTTTGGTTACTGGATTGGAACCTGATACGGTAGATGAAGCTCTTAGATATGGTAGAGAGGTTATAGAATGGGAAAAATGGGATCCTTCTATTGTTAATGAGAAGTCTGAGATTACTTCAACAAGTGCTGAAGAGGCAAGTTCTTCATAA	2661	0.3837	MVSFLRKLRTSSVPPMETEDSISGSSNFEYSFAVVYTGPPLNHSIPEIPTFKIDQVPIASVAPSLSHDFNVPVIQPLGKLHHRNKLKHKRTTSDSTVYPNLESDVVEIEASKSDVHVHVHVHVDLNENKNEDGVVDDVPTNSDTKESGSGLGIGFRTSEICSISEEEEEEETVKTKHVKHPSAVTFCDPESNCVVEIESDEFFDSRNVSVPVKAHAIRPGKKGSCYKCFRGNSLTEREVCIVCNAKYCRYCVIRAMGSMPEGRKCVDCIGYGIDESKRSKLGKCSRMMKQLLSETIVDQIMEAERLCEANQIPPELVQVNSQRLNREQLKLLLHCDHPPKDLKPGSYWYDKASGFWGKKGQPPCEIISPRLDVGGRLEKNASHGNTNVMINDRVITKKEMLILKMAGVPCEGTPHFWVNPDGSYREEGQKNDRGFIWDKVGTKVACAILSLPVPSKSALLNDEVETAKKLGLHKKKLQNMLLVGCVNSGACTIFKQAKLLYNAPFSENELQNIKLVIQSNLFTYLGILLEAREDFEEDSLLENRKRLPSDESTSSGENVDTTTPYSIGQRLKGFSDWLLKCMLSGNMDAIFPAAIREYGPMVEELWRNEAIQATYNRRNELKTLPRSANYFLDRAIEISKIDYEPSDMDILYAEGMSLPNSLTSMEFSFPKSSREESLHPDYQHDSSLRYQLIRVHHKNLGANCKFLEMFEDTDVILFSVSLTDYDEYIVDSKGVSTNKMLASKNLFENIIDHPSFKKKKFVLILTKFDLLEEKIEHVPLKKCEWFSDFNPVTSHNNKRSGNGNNGTTPSLAQSAFQYIAIKFKRLFHSFTERILFVSLVTGLEPDTVDEALRYGREVIEWEKWDPSIVNEKSEITSTSAEEASSS*	887

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa6g2225	886	Gene3D	-	506	650	IPR011025	GO:0007165
	Psa6g2225	886	PRINTS	Alpha G protein (transducin) signature	479	494	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
	Psa6g2225	886	PRINTS	Alpha G protein (transducin) signature	643	665	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
	Psa6g2225	886	PRINTS	Alpha G protein (transducin) signature	713	741	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
	Psa6g2225	886	PRINTS	Alpha G protein (transducin) signature	761	770	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
	Psa6g2225	886	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	474	853	IPR027417	-
	Psa6g2225	886	Gene3D	-	651	867	IPR027417	-
	Psa6g2225	886	Pfam	G-protein alpha subunit	472	854	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
	Psa6g2225	886	SMART	galpha_1	458	843	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
	Psa6g2225	886	MobiDBLite	consensus disorder prediction	542	562	-	-
	Psa6g2225	886	PANTHER	GTP-BINDING PROTEIN ALPHA SUBUNIT	20	882	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
	Psa6g2225	886	ProSiteProfiles	G-alpha domain profile.	476	875	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
	Psa6g2225	886	PANTHER	EXTRA-LARGE GUANINE NUCLEOTIDE-BINDING PROTEIN 2	20	882	-	-
	Psa6g2225	886	SUPERFAMILY	Transducin (alpha subunit), insertion domain	505	653	IPR011025	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa6g2225	Psa-Chr6	157287066	157291369	Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa6g2225	-		-	gmx:112997598	1160.98

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Psa6g2225	6	157287066	157291369	Psa6g2225	6	157287066	157291369	ECH