Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1968 ATGTCGGTTAAGGAGTGCGATCACCACAAAGGAAGAAAAAGAATACTCTTCCAAAGAATATTTTGGGGAATCATAGTGTTCCTTTTCTTAGTTTTACTTACAATTCTCCTCATATGGGCAATCCTAAGACCCACAAAACCAACCTTCATCCTCTCCGACATAACCGTCTCCGCCTTCAACACAACGCAACCGAATCTCCTAACGACCAATTTCCAAATAACACTAATGTCAAGAAATCCCAACGACCACATCGGCGTCTACTACGACCGTCTCGACACCTACGTCACCTACCGTAGCCAGCAGATCACTTACAGAACCTCCATACCACCTTCCTACCAAGGTCACAAAGAAGTCGACGTTTGGTCGCCGGCGGTTTACGGCACCGAAGTTCCCGTTGCTCCGTTTAACTTTCAGACTCTCTCGCAGGATCAATCTAACGGTAATTTCTTTGCTACCGTTAGAGTTGACGGAAGAGTTCGTTGGAAGGTTGGTACGTTTATTTCTGGTCATTATCATCTCTATGTTCGGTGTCCTGCTTATATCTCAGTTCGTAACGACGGTAACGGCGTTAACATGGGAGCTAACGGCGTTTATATTGGAGCAAACGTCGTTAAGTATCAGATGGATCAACGTTGCTCTGTTAGCCTTTGA 651 0.4531 MSVKECDHHKGRKRILFQRIFWGIIVFLFLVLLTILLIWAILRPTKPTFILSDITVSAFNTTQPNLLTTNFQITLMSRNPNDHIGVYYDRLDTYVTYRSQQITYRTSIPPSYQGHKEVDVWSPAVYGTEVPVAPFNFQTLSQDQSNGNFFATVRVDGRVRWKVGTFISGHYHLYVRCPAYISVRNDGNGVNMGANGVYIGANVVKYQMDQRCSVSL* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1968 216 Pfam Late embryogenesis abundant protein 75 177 IPR004864 -
Psa6g1968 216 PANTHER OS05G0367900 PROTEIN 4 215 IPR044839 GO:0098542
Psa6g1968 216 PANTHER LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN 4 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1968 Psa-Chr6 124678955 124680281 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1968 23 177 EF-hand Containing Proteins AT5G21130 19.355 5.52e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1968 - - lang:109336699 317.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g1968 6 124678955 124680281 Psa6g1968 6 124678955 124680281 ECH
Psa3g0694 3 62182821 62184211 Psa6g1968 6 124678955 124680281 PCT