Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1490 ATGCCTATACCTCTATTTCTCCATCAAATCTCTACTTTAATACTAACTTCTTATTCAGGATCATCGCTTCTCGGATTATCCGTATTGGAACTTGCTGCAATATGTGTGAATCTCACTCTTGTTTTATTGTTTCTCTTTGTTGTCTCGGTTAGAAAGATTCTCGTCAATAAGAGAAATCGAATAGGTAAAGACAACATTCCTGGGAGCGCTAGCGTTGTTATTGATACAGAAACAACAAGTGATGTTTCGAATATAAGTCTTTGGTTCAAGTTATCGTTGTTGTCTTGTTTCTATGTTCTCTTCGTGCAGCTTTTGGTCTTGGGATTTGACTTGTGTGTTTCGATATGGGGTCAGGTTCTACACTGGTCAGTTCTTTCTGTGTCGGCTTCACAGGTTTTGTCTTGGTGTGTCTTGAGCTTTTCGGCTTTGAAAACCAAGTTTAAGGGGTTAGACAAGTTTCCATTTTTGTTAAGAGTTTGGTGGCTTTTATCATTTCTGATTTGTTTGTGTGGTTTATATGTTGATGGAAGAGGCTTTTCGGTGGACGGTTTTAACTACTTTTCTTCTCACGCTGTTGCCAATTTCGCTGTTACACCAGGACTTGCTTTTTTGGGTGTGGTTGCAATTAGGGGTGTTACTGGTATACAAGTTTTGAAAAACTCTGGTCTTCAAGACCCATTACTTGTTGTTCAAGAAGAAGAAGAACTAGGGTGTGTCAAAGTTACTCCATATTGGGATGCGGGACTTTTTAGCTTAGCGACGCTGTCTTGGCTGAATCCGCTTCTTTCCCTTGGTGCAAAGAGACCACTTGAGCTTAAGGATATTCCACTTGTTGCACCTAGTGAAAGAGCTAAGACGAGTTACAAGGTTGTGAATTCTAATTGGGAGAAATTGAAGGCTGAAAATCTAAATCTCTCGAAGCAACCTTCATTGGCTTGGGCACTCCTCAAGTCATTTTGGAAGGAAGCAGCTTTGAATGCTGTATTTGCTGGCATGACTACTTTGGTTTCGTATGTAGGTCCATACATGATAAGTTACTTTGTTGATTTCTTGGGTGGTAAAGAGACTTTTGCTCACGAGGGTTATATCCTTGCTGGTATATTCTTTATGGCGAAGCTTGTTGAGACGCTGACGACTAGGCAGTGGTATCTAGGAGTGGATATATTAGGTATGCATGTTAGGTCAGCTCTAACGGCGATGGTGTATAAGAAGGGTCTCAGACTCTCGAGCTCGGCGAAGCAAAGTCATACAAGTGGGGAGATTGTTAACTACATGGCTGTTGATGTTCAGAGGGTAGGGGACTTTGCTTGGTACCTTCATGACATGTGGATGCTACCTCTGCAAATTGCTCTTGCTCTTGCAATTTTGTATAAGAATGTTGGAATTGCTTTTGTTGCAACATTGATTGCTACAATCGTTTCCATTGTTGTCACTATTCCTGTGGCTAGGATACAAGAAGAATATCAAGACAACTTGATGTCTGCTAAGGATGAAAGGATGAGAAAAACATCCGAGTGTCTGAGAAACATGAGGATTCTTAAGCTGCAAGCTTGGGAGGATCGATATAGAATAAGATTGGAGGAAATGCGTGGAGTAGAGTTCAAGTGGCTAAGGAAAGCACTTTACTCTCAGGCTTTCATAACTTTCATATTTTGGAGCTCCCCTATATTTGTTTCGGTAGTCACGTTTGCTACTACTATATTTTTAGGAACTCAGCTGACTGCAGGTGGTGTTCTCTCTGCTTTAGCTACTTTCAGGATTCTCCAAGAACCTCTCAGAAATTTTCCTGATTTGGTATCAACCATGGCTCAGACAAAGGTTTCTCTTGATCGCATATCCAATTTCCTGCAGGATGAAGAACTGCGGGAAGATGCAACTACTATCTTGCCGTGCGGGACTTCTGACATTGCCATAGAAATTATAGATGGTGTCTTCTGCTGGGACACTACTTCCTCTAGGCCTACTCTATCAGGAATACATGTGAAAGTGGAGAGAGGAATGAGTGTAGCTGTTTGTGGCACCGTTGGTTCAGGGAAATCAAGTTTTCTTTCTTGCATCCTTGGAGAGATTCCCAAGCTTTCTGGTGAAGTAAGACTGTGTGGTTCTGCAGCATATGTCTCACAATCAGCATGGATACAGTCAGGAAATATAGAAGAAAATATTCTGTTTGGAAACCCAATGGATAAAGCAAAGTACAAGAATGTTATTCACGCTTGTTCACTGAAAAAGGACCTAGAGCTTTTCTCACATGGAGACCAAACAATTATTGGTGAAAGAGGTATAAATATGAGCGGTGGCCAGAAGCAACGGATTCAGCTTGCACGAGCACTCTACCAAGATGCTGATATTTATCTCCTTGATGACCCCTTCAGTGCGCTTGATGCCCATACTGGATCAGAACTATTCAGAGAGTATGTATTGACAGAACTAGTAGATAAAACTGTCATTTTTGTGACCCATCAAGTTGAATTTCTTCCAGCTGCTGATATGATACTGGTTCTTAAAGAAGGCCAGATCATACAGGCGGGAAAGTATGATGATCTTCTACAGGCAGGAACAGATTTTAGAACTCTAGTTTCAGCTCACCATGAAGCAATAGAGGCTATGGACATTCCTACTCACTCTTCCTCAGAAGATTCAGATGAAGATGAGCCCTTGGATACATCTATTATGACCATGAAGAAATCTATTTCTTCTGTTAATGACATTAACAGTTTGGCGAAGGAAGTTCCCGAGGGATCTTCAGATTCTAAAGAAATTAAGGAAAAGAAGAAGAAGGCAAAACGCTCAAGAAAAAAACAGCTTGTCCAGGAAGAGGAGAGGGTTAGAGGTAGAATCAACATGAAAATGTACCTGTCTTACATGTCTGCCGCATATAAAGGTTTATTGATTCCCCTCATCATCATTGCACAAACACTATTCCAGTTCCTTCAGATTGCCAGCAATTGGTGGATGGCTTGGGCGAATCCTCAGACAGAGGGAGACGATCCCAAAGTTACTCCCATGAATCTTCTTCTTGTTTACATGGCCCTTGCCTTTGGAAGCTCATGCTTCATATTCGTAAGGGCCGTTCTTGTTGCTACATTTGGTCTAGCAGCAGCGCAAAAGCTATTTTTCAACATGCTTAGAAGTATCTTCCATGCACCAATGTCTTTCTTTGATTCTACACCAGCTGGAAGGATCCTGAACCGTGTTTCAATTGATCAAAGTGTTGTGGACCTTGACATTCCTTTTAGACTTGGAGGGTTTGCTTCATCAACAATACAGCTTATTGGTATTGTTGCTGTAATGTCCCAGGTTACATGGCAAGTTTTGCTCCTAGTTATCCCAATGGCAATTGGTTGTTTGTCGATGCAGAAATACTACATTGCTTCCTCAAGGGAACTGGTACGTATTGTAAGCATCCAGAAATCTCCAATTATACAACTTTTTGGTGAATCAATTGCTGGAGCAGCCACCATTAGAGGTTTTGGACAAGAAAAAAGGTTCTTGAAGAGGAACCTCTATCTTCTGGATTCTTTTGCGCGACCATTCTTCTGCAGTCTTGCTGCTATTGAGTGGCTCTGCCTCCGGATGGAATTACTTTCAACTTGTGTATTTGCTTTCTGCATGTTCTCACTTGTGACTTTTCCCCGTGGAAGTATTGACCCCAGCATGGCTGGACTTGCTGTGACGTATGGCCTGAATTTAAATGGACGTTTGTCTCGTTGGATACTTAGCTTTTGTAAACTTGAAAACAAAATAATATCTATTGAAAGAATTTATCAGTACAGTCAAATTCCTAATGAAGCACCACCAGTTATTGAAGAATCTCGCCCTCCATCCTCATGGCCCGAAAATGGGACAATCCAACTAATTGATCTGAAGGTTCGTTACAAGGAAAATCTTCCCTTGGTGCTTCATGGAGTATCCTGCATATTTCCTGGAGGAAAGAAGATTGGAATAGTTGGACGAACTGGCAGTGGCAAATCTACTCTGATTCAGGCATTATTTCGATTGGTTGAACCAGCAACCGGGAGTATCCTTATAGACAACATTGATATCTCAGGAATTGGCCTTCATGATCTTCGGACCCATTTGAGTATCATACCACAAGATCCAACCTTATTTGAGGGCACCATTCGAGGCAATCTGGATCCTCTTGAAGAGCATTCTGATAAAGAGATTTGGGAGGCACTAGATAAGTCTCAACTTGGAGAGATCATCCGTGCGAAAGGACAAAAGCTCGATACACCAGTGCTAGAAAATGGTGATAATTGGAGTGTGGGACAACGTCAACTTGTTTCTCTTGGCCGAGCTCTTCTGAAGCAGTCAAAGATACTTGTACTTGATGAAGCAACAGCATCTGTTGATACTGCTACTGATAATCTTATCCAGAAGGTTATCCGAGAAGAGTTCAAAGACTGCACTGTGTGCACTATTGCACATCGTATTCCTACTGTTATTGACAGTGATCTTGTCCTGGTACTCAGCGATGGTCTAGTTGCAGAGTTTGACACTCCATTGCGGCTATTAGAAGACAAGTCATCCATGTTTTTGAAGTTGGTGACAGAATATTCATCGCGATCAAATGGCATGCCGGAGCTTTAA 4590 0.4166 MPIPLFLHQISTLILTSYSGSSLLGLSVLELAAICVNLTLVLLFLFVVSVRKILVNKRNRIGKDNIPGSASVVIDTETTSDVSNISLWFKLSLLSCFYVLFVQLLVLGFDLCVSIWGQVLHWSVLSVSASQVLSWCVLSFSALKTKFKGLDKFPFLLRVWWLLSFLICLCGLYVDGRGFSVDGFNYFSSHAVANFAVTPGLAFLGVVAIRGVTGIQVLKNSGLQDPLLVVQEEEELGCVKVTPYWDAGLFSLATLSWLNPLLSLGAKRPLELKDIPLVAPSERAKTSYKVVNSNWEKLKAENLNLSKQPSLAWALLKSFWKEAALNAVFAGMTTLVSYVGPYMISYFVDFLGGKETFAHEGYILAGIFFMAKLVETLTTRQWYLGVDILGMHVRSALTAMVYKKGLRLSSSAKQSHTSGEIVNYMAVDVQRVGDFAWYLHDMWMLPLQIALALAILYKNVGIAFVATLIATIVSIVVTIPVARIQEEYQDNLMSAKDERMRKTSECLRNMRILKLQAWEDRYRIRLEEMRGVEFKWLRKALYSQAFITFIFWSSPIFVSVVTFATTIFLGTQLTAGGVLSALATFRILQEPLRNFPDLVSTMAQTKVSLDRISNFLQDEELREDATTILPCGTSDIAIEIIDGVFCWDTTSSRPTLSGIHVKVERGMSVAVCGTVGSGKSSFLSCILGEIPKLSGEVRLCGSAAYVSQSAWIQSGNIEENILFGNPMDKAKYKNVIHACSLKKDLELFSHGDQTIIGERGINMSGGQKQRIQLARALYQDADIYLLDDPFSALDAHTGSELFREYVLTELVDKTVIFVTHQVEFLPAADMILVLKEGQIIQAGKYDDLLQAGTDFRTLVSAHHEAIEAMDIPTHSSSEDSDEDEPLDTSIMTMKKSISSVNDINSLAKEVPEGSSDSKEIKEKKKKAKRSRKKQLVQEEERVRGRINMKMYLSYMSAAYKGLLIPLIIIAQTLFQFLQIASNWWMAWANPQTEGDDPKVTPMNLLLVYMALAFGSSCFIFVRAVLVATFGLAAAQKLFFNMLRSIFHAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASSTIQLIGIVAVMSQVTWQVLLLVIPMAIGCLSMQKYYIASSRELVRIVSIQKSPIIQLFGESIAGAATIRGFGQEKRFLKRNLYLLDSFARPFFCSLAAIEWLCLRMELLSTCVFAFCMFSLVTFPRGSIDPSMAGLAVTYGLNLNGRLSRWILSFCKLENKIISIERIYQYSQIPNEAPPVIEESRPPSSWPENGTIQLIDLKVRYKENLPLVLHGVSCIFPGGKKIGIVGRTGSGKSTLIQALFRLVEPATGSILIDNIDISGIGLHDLRTHLSIIPQDPTLFEGTIRGNLDPLEEHSDKEIWEALDKSQLGEIIRAKGQKLDTPVLENGDNWSVGQRQLVSLGRALLKQSKILVLDEATASVDTATDNLIQKVIREEFKDCTVCTIAHRIPTVIDSDLVLVLSDGLVAEFDTPLRLLEDKSSMFLKLVTEYSSRSNGMPEL* 1530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1490 1529 CDD ABCC_MRP_domain1 638 838 - -
Psa6g1490 1529 CDD ABC_6TM_ABCC_D1 325 612 IPR044746 GO:0140359
Psa6g1490 1529 SMART AAA_5 665 846 IPR003593 -
Psa6g1490 1529 SMART AAA_5 1309 1494 IPR003593 -
Psa6g1490 1529 Coils Coil 918 938 - -
Psa6g1490 1529 MobiDBLite consensus disorder prediction 909 938 - -
Psa6g1490 1529 CDD ABCC_MRP_domain2 1281 1501 - -
Psa6g1490 1529 Gene3D - 633 866 IPR027417 -
Psa6g1490 1529 ProSitePatterns ABC transporters family signature. 763 777 IPR017871 GO:0005524
Psa6g1490 1529 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 966 1236 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa6g1490 1529 SUPERFAMILY ABC transporter transmembrane region 313 623 IPR036640 GO:0005524|GO:0016021
Psa6g1490 1529 SUPERFAMILY ABC transporter transmembrane region 963 1266 IPR036640 GO:0005524|GO:0016021
Psa6g1490 1529 Pfam ABC transporter transmembrane region 328 592 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa6g1490 1529 Pfam ABC transporter transmembrane region 966 1213 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa6g1490 1529 Coils Coil 485 505 - -
Psa6g1490 1529 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 324 604 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa6g1490 1529 Gene3D ABC transporter type 1, transmembrane domain 297 620 IPR036640 GO:0005524|GO:0016021
Psa6g1490 1529 Gene3D ABC transporter type 1, transmembrane domain 925 1264 IPR036640 GO:0005524|GO:0016021
Psa6g1490 1529 Pfam ABC transporter 1300 1448 IPR003439 GO:0005524
Psa6g1490 1529 Pfam ABC transporter 656 790 IPR003439 GO:0005524
Psa6g1490 1529 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 68 1528 - -
Psa6g1490 1529 Gene3D - 1267 1519 IPR027417 -
Psa6g1490 1529 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1283 1517 IPR003439 GO:0005524
Psa6g1490 1529 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 68 1528 - -
Psa6g1490 1529 CDD ABC_6TM_ABCC_D2 964 1258 IPR044726 GO:0140359
Psa6g1490 1529 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1274 1512 IPR027417 -
Psa6g1490 1529 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 638 861 IPR003439 GO:0005524
Psa6g1490 1529 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 636 860 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1490 Psa-Chr6 72076303 72083796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1490 652 854 Calmodulin-binding Proteins AT2G36910 31.982 6.75e-20 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1490 - - cam:101514243 2529.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g1490 6 72076303 72083796 Psa6g1490 6 72076303 72083796 ECH
Psa3g1253 3 113484575 113490875 Psa6g1490 6 72076303 72083796 PCT