Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1040 ATGGCTACTACTCCTAAGCTTCTTCTTTTTTACCTCCTTTCAATCTCACTCTCTTTTCATGGAGCTAAGTCCATATCCCAAGATTTTACACAAGAATTGCATGTCACGACAGATGCTTATATAGGTGTCAACATTGGTACAGATATAACTAACTTGCCAAGTCCAACAGAAACTGTGGCCCTTCTCAAGGCTCAAAGCATCCAGCATGTCAGACTCTACGATGCGGACAGGTCCATGCTTCTTGCACTTGCCAAGACTGGAATCCAAGTAATTGTTTCTGTTCCTAATGACGAGCTACTCGGAATTGGTCAGTCCAATGCCACAGCCGCGAATTGGGTTGCTCGTAATATCATAGCTCATGTCCCTTCTACTAACATTACTGCCATAGCCGTTGGTTCCGAAGTCTTAACTTCGCTCCCAAATGCAGCTCCTGTCCTTGTATCCGCACTTCAATTCATTCATTCTGCGCTTGTTGCAGCTAATCTTGATGATCAAATTAAAGTATCTACTCCACTTTCTACTTCCATCATACTTGACTCTTTCCCACCATCTCAAGCGTTCTTCAATCGATCTTGGGATCCGGTCATGTCTCCTTTACTTAAATTTTTGCAGTCGACCGGTTCATATCTTATGCTCAACGTATATCCTTATTATGATTACATGCAATCCAATAACGTAATCCCTCTAGATTATGCTCTATTCCGTCCCTTACCGCCAAATAAAGAAGCTGTTGATAGTAACACCCTCCTGCATTATACAAATGTTTTTGACGCAGTTATTGACGCTGCTTATTTTGCAATGTCGTATTTGAAATTTACCAATATCCCTATTTTAGTCACCGAGTCAGGATGGCCCTCCAAAGGTGGTTCGTCCGAGCCGGATGCTACTCCTGATAATGCAAACACCTTCAATAGTAACCTTATCCGGCATGTTTTGAACAATACAGGGACTCCGAAACAACCTAGAGTCACAGTTAGTACGTATATTTATGAGCTTTATAACGAAGACTTAAGAACAGGTCAGGTATCTGAAAGCAATTGGGGGCTTTTTTATGCAAACGGAGCGCCGGTTTATACTCTACATTTGACTGGTGCCGGTACTATGTTTGCAAACGATACGACGAACCAAACATTTTGTGTTGCTAAGAGTAATGCAGATACTAAGATGATACAGGCAGCTCTTGATTGGGCTTGTGGACCGGGGAAGGTGGACTGTTCGCCTTTGCTACACGGTCAACCGTGTTCTGATCCGGATAATGTTGTTGCGCATGCTACATATGCCTTTAATGCTTATTATCAGAAGATGGGCAAATCTCCCGGGTCCTGTGATTTCAAAGGAGTTGCCTCTGTCACCACCACAAACCCAAGTCATGCTTCATGTATATTTCCAGGAAGTGGTGGTAGAAATGGCAGCAGCATAAATGGAACAGCACTAGCCCCTTCTATCAACTCCACAACTTCAGCCTCTTTTTCACAATACTACAATGGTGGATTTTTCACCAGCTATGTGATTCTTGCACTACTTTTGAGTGCACTTTTTGTCTTGTAA 1548 0.427 MATTPKLLLFYLLSISLSFHGAKSISQDFTQELHVTTDAYIGVNIGTDITNLPSPTETVALLKAQSIQHVRLYDADRSMLLALAKTGIQVIVSVPNDELLGIGQSNATAANWVARNIIAHVPSTNITAIAVGSEVLTSLPNAAPVLVSALQFIHSALVAANLDDQIKVSTPLSTSIILDSFPPSQAFFNRSWDPVMSPLLKFLQSTGSYLMLNVYPYYDYMQSNNVIPLDYALFRPLPPNKEAVDSNTLLHYTNVFDAVIDAAYFAMSYLKFTNIPILVTESGWPSKGGSSEPDATPDNANTFNSNLIRHVLNNTGTPKQPRVTVSTYIYELYNEDLRTGQVSESNWGLFYANGAPVYTLHLTGAGTMFANDTTNQTFCVAKSNADTKMIQAALDWACGPGKVDCSPLLHGQPCSDPDNVVAHATYAFNAYYQKMGKSPGSCDFKGVASVTTTNPSHASCIFPGSGGRNGSSINGTALAPSINSTTSASFSQYYNGGFFTSYVILALLLSALFVL* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1040 515 Pfam X8 domain 378 448 IPR012946 -
Psa6g1040 515 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE-LIKE PROTEIN 34 506 - -
Psa6g1040 515 Pfam Glycosyl hydrolases family 17 41 361 IPR000490 GO:0004553|GO:0005975
Psa6g1040 515 SUPERFAMILY (Trans)glycosidases 41 361 IPR017853 -
Psa6g1040 515 Gene3D - 371 462 - -
Psa6g1040 515 Gene3D Glycosidases 40 367 - -
Psa6g1040 515 ProSitePatterns Glycosyl hydrolases family 17 signature. 275 288 IPR000490 GO:0004553|GO:0005975
Psa6g1040 515 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 34 506 IPR044965 GO:0004553|GO:0005975
Psa6g1040 515 SMART X8_cls 377 462 IPR012946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1040 Psa-Chr6 40092795 40097548 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1040 38 456 Glycoside Hydrolase AT2G01630 77.327 0.0 687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1040 K19891 - gmx:100810169 821.617
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g1040 6 40092795 40097548 Psa6g1040 6 40092795 40097548 ECH