Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0894 ATGGCTTCGAAGCGGATCTTGAAAGAACTCAAGGATTTGCAGAAGGATCCTCCAACTTCATGCAGTGCTGGTCCTGTTGCTGAAGATATGTTTCATTGGCAAGCAACAATTATGGGTCCTCCAGACAGTCCTTATTCCGGAGGTGTTTTCCTTGTCACTATCCATTTCCCTCCAGATTATCCTTTTAAGCCACCCAAGGTTGCATTCAGGACAAAGGTATTTCACCCAAACATCAATAGCAACGGAAGCATTTGCCTTGATATACTAAAGGAGCAATGGAGCCCTGCTCTTACCATTTCCAAGGTGTTGCTCTCTATCTGCTCCTTGTTGACTGACCCAAATCCTGATGATCCTCTGGTTCCTGAAATCGCTCACATGTACAAGACAGACAAGAACAAGTACGAGTCAACTGCAAGAAGCTGGACCCAGAAATATGCTATGGGTTAA 447 0.4474 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARSWTQKYAMG* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0894 148 Pfam Ubiquitin-conjugating enzyme 5 141 IPR000608 -
Psa6g0894 148 SMART ubc_7 4 147 - -
Psa6g0894 148 Gene3D Ubiquitin Conjugating Enzyme 1 148 IPR016135 -
Psa6g0894 148 PANTHER BNAA01G32320D PROTEIN 3 145 - -
Psa6g0894 148 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 74 89 IPR023313 -
Psa6g0894 148 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 147 IPR000608 -
Psa6g0894 148 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 145 - -
Psa6g0894 148 CDD UBCc 3 142 IPR000608 -
Psa6g0894 148 SUPERFAMILY UBC-like 2 147 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0894 Psa-Chr6 33238546 33241824 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0894 2 114 Miscellaneous Gene Families AT3G17000 36.975 1.03e-20 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0894 - K06689 ini:109188777 312.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0084 3 9966935 9969014 Psa6g0894 6 33238546 33241824 ECH
Psa6g0894 6 33238546 33241824 Psa6g0894 6 33238546 33241824 ECH