Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0893 ATGCTTCTGCACTGCAAAGCATTTCTAACCTCATCATCACTGAGAGGAATCGCTAGGCAAATGCGTTCCTTACGAACACTGTCTTCGCACCGAGAGGATCCAGAAATGAAAGATTTACTTGATTACATTGATTCCTTGAAAAATTACGAGAAATCTGGGGTTCCTACGGGTGCAGGAACTGATTCCAACGACGGATTTGATCTTGGTAGAATGAGACGCCTAATGGATCGTTTTGGTAATCCTCATTCCAACTTCAAGGCCGTTCATATTGCTGGGACAAAAGGAAAAGGATCAACGGCTGCTTATATATCTAATATTCTGAGGACGGAAGGTTATTCTGTTGGTTGTTATACTAGTCCACACATCCAGACTATCAGGGAACGCATTCTGCTAGGAAGATCGGGTGATCCTGTTTCAGCAAAATTGTTGAACAATCTCTTTCATAGGATCAAGCAGGATCTCGACCAAGCAATAAAAGAGGAAAATGGTTGCATAAGCCATTTCGAGGTTTTCACTGCCATGGCATTCATCTTGTTTGCTGATGAGAAAGTTGATATTGCAGTTATTGAGGCTGGATTAGGAGGTGCACGAGATGCAACAAACATTATATCGAGCTCTGGTCTTGCTGCTGCAGTCATAACGACTGTAGGTGAGGAACATTTGGCAGCTCTTGGGGGTTCGTTGGAAACTATTGCAATGGCAAAGGCTGGAATTATAAAACAAGCCCGTCCATTGGTGCTGGGTGGGCCATTTCTCCCTCATATTGAGCAGATTATTCGAGAAAAAGCGGTAATCACGGGCTCCCCTATTGTTTCAGCATATGACGCTGGGAACAGCCTTGCAGTAAAAAGTTTCAACATAGTTAATGGCAAACCTTGTCAAATTTGTGATATTGAAATACAAACTGTCAAGGACTTGAAACTGTCCTGTAAGTTACATGATTTGAAGCTGCAAATGCCTGGTGATCACCAACTTCAAAATGCAGCAACTGCTACTTGTGTGGCACTCTGTCTTCGTAGTTTCGGATGGAAGATTTCTGATGAATCTATTAGAAGCGGTTTACAGAGCACATACCTCCTTGGAAGAAGTCAACTCCTAACATCGGCAGATGCTAAGGTCTTAGGACTTACTGGAGCAACAATACTTCTTGATGGAGCTCACACCAAAGAGTCTGCCAAAGCACTGATGAATACAATAAAGATGGCGTTTCCCAAGGCTCGATTAGCTTTTGTGGTTGCAATGGCATGTGACAAAGATCATGCTGGTTTTGCTCAAGAGATTCTCTCAGGTGCATATGTGGAGACTGTTATTTTGACTGAAGCTGCTATTGCGGGAGCTGCAACTCGAACAACATCAGCTTTTCTGTTGAGAGATTCTTGGATTAAAGCTTCTGAAGAACTCGGTGTCGGCATTTGTCACGAGGGAATGACAGAATACAGAGAGTTATTAAAGGAACAGCCAGTAAGCTCTGACAGCAATTTGAGTGATGGTAAGACCATATTGGCTACCGAGTCTTCTTTAAAGGATTGCTTGAGAGTTGCAAATGAGATTCTAAACAGAAGAAGGGATGAAAATTGTGTTGTTGTCATCACTGGATCACTGCATATTGTATCCTCAGTCTTAGCTTCTCTTGCTGATTAA 1641 0.426 MLLHCKAFLTSSSLRGIARQMRSLRTLSSHREDPEMKDLLDYIDSLKNYEKSGVPTGAGTDSNDGFDLGRMRRLMDRFGNPHSNFKAVHIAGTKGKGSTAAYISNILRTEGYSVGCYTSPHIQTIRERILLGRSGDPVSAKLLNNLFHRIKQDLDQAIKEENGCISHFEVFTAMAFILFADEKVDIAVIEAGLGGARDATNIISSSGLAAAVITTVGEEHLAALGGSLETIAMAKAGIIKQARPLVLGGPFLPHIEQIIREKAVITGSPIVSAYDAGNSLAVKSFNIVNGKPCQICDIEIQTVKDLKLSCKLHDLKLQMPGDHQLQNAATATCVALCLRSFGWKISDESIRSGLQSTYLLGRSQLLTSADAKVLGLTGATILLDGAHTKESAKALMNTIKMAFPKARLAFVVAMACDKDHAGFAQEILSGAYVETVILTEAAIAGAATRTTSAFLLRDSWIKASEELGVGICHEGMTEYRELLKEQPVSSDSNLSDGKTILATESSLKDCLRVANEILNRRRDENCVVVITGSLHIVSSVLASLAD* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0893 546 SUPERFAMILY MurD-like peptide ligases, peptide-binding domain 361 544 IPR036615 GO:0009058|GO:0016881
Psa6g0893 546 Gene3D - 56 359 IPR036565 GO:0005524|GO:0009058
Psa6g0893 546 TIGRFAM folC: bifunctional protein FolC 68 542 IPR001645 GO:0004326|GO:0005524|GO:0009396
Psa6g0893 546 ProSitePatterns Folylpolyglutamate synthase signature 1. 88 111 IPR018109 GO:0004326|GO:0005524|GO:0009396
Psa6g0893 546 Pfam Mur ligase middle domain 90 335 IPR013221 GO:0005524|GO:0009058|GO:0016881
Psa6g0893 546 PANTHER DIHYDROFOLATE SYNTHETASE-RELATED 30 544 - -
Psa6g0893 546 Gene3D - 361 546 IPR036615 GO:0009058|GO:0016881
Psa6g0893 546 PANTHER FOLYLPOLYGLUTAMATE SYNTHASE-RELATED 30 544 IPR001645 GO:0004326|GO:0005524|GO:0009396
Psa6g0893 546 ProSitePatterns Folylpolyglutamate synthase signature 2. 188 203 IPR018109 GO:0004326|GO:0005524|GO:0009396
Psa6g0893 546 SUPERFAMILY MurD-like peptide ligases, catalytic domain 65 358 IPR036565 GO:0005524|GO:0009058
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0893 Psa-Chr6 33192732 33202582 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0893 K20457 - gmx:100816933 842.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g0893 6 33192732 33202582 Psa6g0893 6 33192732 33202582 ECH