Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0890 ATGTTTTTTCGGCCTTTGGATTTGTGCATAAGATTACTACTTTTGAGAAAACAGCTGGATTTCAGGCACTGGTGCAATTCTCAGATGCTGAAACAGCCACTTCTGCAAAGGATGCTTTGGATGGAAGAAGCATACCTAGGTGACAGTTGTATTACATGTTTGGCATGCTACCTACTCACTGGGCATGTGGGACCTTGTACCCTTAAGATCACATATTCTGGACATTCAGACTTAAGTGTTAAGTTTCAGAGTCACAGAAGCAGAGATTACACTAATCCTTACCTTCCTGTTGCTCAATCAGCTATGGAGGGAAGCGGACAGTCTATGATGGGTTTGGATGGGAAGAGACTTGAAGCTGAGAGTAATGTTCTTCTTGCATCAATTGAGAACATGCAGTATGCTGTAACCTTGGATGTCTTGCACACGGTTTTCTCTACTTTTGGACCCATCCAAAAGATTGCAATGTTTGATAAGAATGGTGGTTTGCAGGCTCTGGTTCAGTACCCAGATGTTCAAACAGCCATTGTGGCCAAGGAAGCCTTGGAAGGACACTGCATTTATGATGGGGGATTTTGTAAGCTCCACCTCTCCTATTCACGTCATACTGATTTGAGTATAAAGGTCAATAATGACAGGAGCAGAGACTATACCATGCCTACTGCACCGCCACCAGTTATGAATGCCCAGCCCTCAATTTCAGGGCAACAACAAGCTCCAATGTCTGGTCCTCCTGCTCAACAGTACAATACCGCTCAGTACGCTCCATCGAACAACCAGAATTTTATACCTCAATCTCAGGCTGGATGGGGAGCAGCTCCACCACCACCACCACACACAATGCAGCGGATGCATCATAATCCTTACATGCCACCTGGTACGATGCCGCCACAAGCTGGCCCTGGAATGATGCAGTATCCTGGTCACTATCAATAG 933 0.4566 MFFRPLDLCIRLLLLRKQLDFRHWCNSQMLKQPLLQRMLWMEEAYLGDSCITCLACYLLTGHVGPCTLKITYSGHSDLSVKFQSHRSRDYTNPYLPVAQSAMEGSGQSMMGLDGKRLEAESNVLLASIENMQYAVTLDVLHTVFSTFGPIQKIAMFDKNGGLQALVQYPDVQTAIVAKEALEGHCIYDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTMPTAPPPVMNAQPSISGQQQAPMSGPPAQQYNTAQYAPSNNQNFIPQSQAGWGAAPPPPPHTMQRMHHNPYMPPGTMPPQAGPGMMQYPGHYQ* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0890 310 Pfam RRM-like domain 120 199 IPR021790 -
Psa6g0890 310 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 2 53 306 - -
Psa6g0890 310 SUPERFAMILY RNA-binding domain, RBD 128 221 IPR035979 GO:0003676
Psa6g0890 310 Gene3D - 28 100 IPR012677 -
Psa6g0890 310 Gene3D - 120 223 IPR012677 -
Psa6g0890 310 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 53 306 - -
Psa6g0890 310 CDD RRM3_PTBPH1_PTBPH2 121 217 IPR034794 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0890 Psa-Chr6 32968490 32973860 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0890 K14948 - pvy:116115087 412.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g0890 6 32968490 32973860 Psa6g0890 6 32968490 32973860 ECH