LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa6g0884	ATGGCCAGCTCCGGCAACTCACCTTTTAGAGTAACCTCCATCGCTGCAGGGGAAGCACATACTCTCCTTCTCACCGAGGATGGACGTGTATATTCTTGGGGAAGGGGAACATTCGGAAGACTTGGTTTGGGTTCAGAACAAGACCAACTTTTTCCAGCTCAAATCAAGTTTGGATCACAAGACTCTGTTAGAATAGTGGAAATTGCTGCTGGTGCATATCATAGTCTAGCTCTTGCAGATGATGGATCTGTTTGGTGCTGGGGTTACAATTTATACGGATATTATTCCGTTATTCCTTGCTTGTTGAACAAGTTTCTTGAGTTGCATCCTCCGGATTCTTCAACCTCATTGATAGAAGAAGCAGAAGCTAAACCACCACTAAAGATAGTTTCTGTCAAAGCAGGAGGAATGATGTCACTTTCTATTGACAATCTTGGAGCCCTATGGATGTGGGGAAACTGTCCTAATCAAAGCAAAGACGGTTTGGGTGATGAAGAGAATAGACCAAATCCAGAAATTGTAAAAACATTTGATCAAAATTCTCATTGGTCAATTTATGAAATAGCATGTGGTGCTTTTCACACTGCCTTGTTAACTCATAGAAAAAAAAGGCCTAATGACGCATTAGAATTAGAAAGTGTGTGTTGGACATTTGGTCATGGTGATAATGGACAACTTGGTCATGGAACAATACAAAGTACATCAATTCCTGAACCTGTTCAAGAATTGCCACAGTTTGTGAACCTTGTTTCTGTTGACTGTGGTTTGTTTCATACTTGTGTTGTTTCGTCGGACGGGGATGTTTGGTCGTGGGGAATGAAGAAGGGGCTTGGATTATATCCAGATGCACGAGTTGTTGGTGAATATTCAAGCGACGCTCTTTCTCCGCTTGCTGTAAGAAATCCTTGCGAGGATAAATTTTTGGAACCGGTTCAAGTCGCGTGTGGCGCGGCTCATACGGTTATTGTTGCACAAGAGGGTTATAAAGTTTGGTCTTTAGGAAGAGGAAGAAGTGGAGTCCTTGGAAACGGTAAGGTGATTGAATTTGCAGAAAAATTGAATACAAATAGTTCACAAATATTATGTAAATTCTGCCCCGATGCTGGAGATGGCGCCAAGGTCGTCGAAGTTAAGCTCGGCGGGGGAGATCCGGAAATTGATGATGCTGACTGGCGCCGAATTGCCTACGGCTCTGTTGCCCCATTTGCACTGCTTCAGAGTCGCCGGAGCTCAATTTCCGCATTGTCAAAGTCTCCTTCATCATATCATTCCGATTGGTGGGAGCATGTCCTTCAGTATAGTAAGGACATAACATCACTTCTCGCCGAACCAAAGTTGGCCCTTAATCCTATAATTGAAGATCCGAATGAAATTGTTCAGAATAATGAGGAGCCAACATGTTTGAAAGCTGCCTGGGAGTTGATGGAGATATTTTATGTGGACAAGCAATCTCAAGCATGGCTTCCTGAAAGGCTTGTTGATTGGTTAGCTGACTATGATAGCCTCTTTACCAGTACACAGGAAACAATTCATGGCAAGCTTGTGGATTTTCAAAATGATCTTGTCAACATACAGGTGATTGAAGATGATCCTAGATATTGGGAAGTGATGTCATCTGCATTGTCAGTTGGTTGGCTAGATATAGTGGTGAAAATGCTGCGGTTACACGGGTCTTACCAATTAGATCAGCTCAGCTACCGTGAGTTAGAAAATGGACTGGTGGAGGCAGTCGCTGTTCTTATTTCCAAAATGCCCCGATTACGTCATGAATCAGCTGTTGGAAATTTAGGAGATTGTTTTAAATCCAAACCCGACTTTATCAAAGCCTGGGAAAAATGGAGGTCACAAATTACTAAACTGGACTGCAGTCCATTCTGGATTCAGTGTGATAATCAACAAACTCGTGAGGGCTTAAGAAACTTGCTACAAGTTATGCTGGGTAATACTGAGAGTCTCTGTACAGCTTCATGTTACTGGATTGAGTTGTATATTTCTCATTTTCTATACATCAGGCCATTTACGACCGGAATAGAAAGCATGTATAATTTGGCTCAGAAATGCATCCAATTAAAACCACCGACTGGTACCCATAGGTTGACTGGACTTATGATTGGAATTCTTGCAGAAAATACAGAGGTTGTTTTAGCAGAAATTTCCAGAGAATTTGGTCCTTGGATGGTCGCACACGCCGTGGAATTGTTAACTGCAGGGAGTGAGCAAGCAGAGATTCTTCTACACGATGAGCGTTATAACTTGGGAGGAATCAGTATGATGGAACTACATCGGCTTGCATATGCTCAAGTTCTATCATCACATGCATTGACCTGGCAAATAGCTCCTATATATTTAACATCATGCATGAAGCAAGGAATGGGCTTGCTAGAGAATTTATTGTACAGACAATCTGTTCAACATAACAACTTGTTGCTTAAGAACATTGAGATATGCCGTTTGTACGGGCTTGATTATATCAGTTCAAATATCATGAAGGTTGCTGGAGTCTATCACTGGAAGCATGGTCGTAAAGGGGCTGGAGTATATTGGCTTCAACAATCCCAAGATACAAACTGTCTTAATAGGATTGCACAACAGTTATTTGATTCAGTTGGAAAGTCGATATCTGATGAAAGCTTCAAACAATGGGAAGGCATAATTGAATTATTGGGTTCTGAATCTAAGCCTGCTGGGGGTCTTGAATTTTTACACAAGTATAGGGATTTCAAAAAATCCCTTCAGATGGTATATAGTGGAAAATCAGCTGATGCTGCTCGACAAGCTGTAGGCTCCCTCATACTGAACAAGTACAGCCAAAGACACTATCAGTGCCAACGATCTGTTTCCTTTCAGCTGTTCAATTTTGGAGTGTACGTGGACAACTAA	2880	0.4184	MASSGNSPFRVTSIAAGEAHTLLLTEDGRVYSWGRGTFGRLGLGSEQDQLFPAQIKFGSQDSVRIVEIAAGAYHSLALADDGSVWCWGYNLYGYYSVIPCLLNKFLELHPPDSSTSLIEEAEAKPPLKIVSVKAGGMMSLSIDNLGALWMWGNCPNQSKDGLGDEENRPNPEIVKTFDQNSHWSIYEIACGAFHTALLTHRKKRPNDALELESVCWTFGHGDNGQLGHGTIQSTSIPEPVQELPQFVNLVSVDCGLFHTCVVSSDGDVWSWGMKKGLGLYPDARVVGEYSSDALSPLAVRNPCEDKFLEPVQVACGAAHTVIVAQEGYKVWSLGRGRSGVLGNGKVIEFAEKLNTNSSQILCKFCPDAGDGAKVVEVKLGGGDPEIDDADWRRIAYGSVAPFALLQSRRSSISALSKSPSSYHSDWWEHVLQYSKDITSLLAEPKLALNPIIEDPNEIVQNNEEPTCLKAAWELMEIFYVDKQSQAWLPERLVDWLADYDSLFTSTQETIHGKLVDFQNDLVNIQVIEDDPRYWEVMSSALSVGWLDIVVKMLRLHGSYQLDQLSYRELENGLVEAVAVLISKMPRLRHESAVGNLGDCFKSKPDFIKAWEKWRSQITKLDCSPFWIQCDNQQTREGLRNLLQVMLGNTESLCTASCYWIELYISHFLYIRPFTTGIESMYNLAQKCIQLKPPTGTHRLTGLMIGILAENTEVVLAEISREFGPWMVAHAVELLTAGSEQAEILLHDERYNLGGISMMELHRLAYAQVLSSHALTWQIAPIYLTSCMKQGMGLLENLLYRQSVQHNNLLLKNIEICRLYGLDYISSNIMKVAGVYHWKHGRKGAGVYWLQQSQDTNCLNRIAQQLFDSVGKSISDESFKQWEGIIELLGSESKPAGGLEFLHKYRDFKKSLQMVYSGKSADAARQAVGSLILNKYSQRHYQCQRSVSFQLFNFGVYVDN*	960

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa6g0884	959	PANTHER	FROUNT PROTEIN-RELATED	367	932	IPR011502	-
	Psa6g0884	959	ProSiteProfiles	Regulator of chromosome condensation (RCC1) repeat profile.	28	81	IPR000408	-
	Psa6g0884	959	SUPERFAMILY	RCC1/BLIP-II	7	273	IPR009091	-
	Psa6g0884	959	ProSiteProfiles	Regulator of chromosome condensation (RCC1) repeat profile.	146	201	IPR000408	-
	Psa6g0884	959	ProSitePatterns	Regulator of chromosome condensation (RCC1) signature 2.	68	78	IPR000408	-
	Psa6g0884	959	Pfam	Nup85 Nucleoporin	385	932	IPR011502	-
	Psa6g0884	959	Gene3D	-	113	413	IPR009091	-
	Psa6g0884	959	Gene3D	-	2	98	IPR009091	-
	Psa6g0884	959	ProSiteProfiles	Regulator of chromosome condensation (RCC1) repeat profile.	266	326	IPR000408	-
	Psa6g0884	959	ProSiteProfiles	Regulator of chromosome condensation (RCC1) repeat profile.	213	265	IPR000408	-
	Psa6g0884	959	PRINTS	Chromosome condensation regulator RCC1 signature	29	45	IPR000408	-
	Psa6g0884	959	PRINTS	Chromosome condensation regulator RCC1 signature	65	78	IPR000408	-
	Psa6g0884	959	PRINTS	Chromosome condensation regulator RCC1 signature	215	229	IPR000408	-
	Psa6g0884	959	PRINTS	Chromosome condensation regulator RCC1 signature	317	335	IPR000408	-
	Psa6g0884	959	ProSitePatterns	Regulator of chromosome condensation (RCC1) signature 2.	188	198	IPR000408	-
	Psa6g0884	959	Pfam	Regulator of chromosome condensation (RCC1) repeat	265	322	IPR000408	-
	Psa6g0884	959	Pfam	Regulator of chromosome condensation (RCC1) repeat	216	262	IPR000408	-
	Psa6g0884	959	Pfam	Regulator of chromosome condensation (RCC1) repeat	146	198	IPR000408	-
	Psa6g0884	959	Pfam	Regulator of chromosome condensation (RCC1) repeat	27	78	IPR000408	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa6g0884	Psa-Chr6	32540759	32549481	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa6g0884	K14304		-	gmx:100785741	979.933

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Psa6g0884	6	32540759	32549481	Psa6g0884	6	32540759	32549481	ECH