Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0878 ATGGCAACACTTCAAACTTCTCTTCTCTTCAAACTCCCCTTCCCATTCCTCTTTCCCAACCACTCCACTCATAAACCTCACCGCCACTTCTCCTTCAACCCCACGCGCCTCCGCCCGCGCGTTCTACCCCCTCCTCTCTGCACATTTCAACCCGACGCAACAACTCCCCACTCTGACCCTAACCCAACCCTACCCGAACCAAAACCCGATTCCCTTGACGTGGAGCTTATAAACTCGACGGAAAACGACACCGTTGCGGGGTTGGATTCAAATTCAAACGAATCACGATTCGAGAGCGTTGATGGCGAGAGGCTCGAGGCCTCGGAAAGTGAAAAGAAGGTTTCGAAATTGCCGATAGTGGTGTTCTTGATTGGAGTTTGGGTGAGAGCAAGAGAACGTGTTGAGAGGGCGTTTTCGGAATTTTTTGATTGGTGGCCGTTTTGGCGGCAGGAGAAGCGGTTGGCGAAGTTGATTTCTGAAGCCGATGTAAATCGGCAGGATGCTGCTAAGCAGAGTGCTCTGTTTGTTGAACTCAATAAGCACAGTCCCGAGTCTGTGATAAAGATATTTGAAGAAAGGGATCGAGCCGTGGACAGCAAAGGAGTTGCAGAATATCTTCGAGCACTAGTGGTCACTAATGCTATTGCAGAATATCTTCCTGATAAGGAATCTGGAAAACCTTCTGGCATTCCTTCCCTGCTGCAAGAGTTGAAACAACGGGCATCAGGTAACATAGATGAGACTTTTCTTAACCCTGGAATATCTGCGAAACAGCCGCTGCATGTGGTTATGGTTGATCAGAAAGTATCATACAAATCACGTTTTGTATCAGAGGTTGTCTCAACTATTTTTTTTACTGTAGCTATTGGATTGGTCTGGTTTATGTGTTCTGCTGCACTTCAAAAATACATTGGAGGCTTGGGTGGGATTGGTTCTTCAGGTGTTGGTTCTAGTTCTTCCTATACCCCAAAGGAGTTAAACAAGGAAGTAATGCCAGAAAAGAATGTAAAAACTTTTAAGGATGTGAAAGGTTGTGATGATGCAAAGCAAGAACTTGAGGAAGTTGTGGAGTACCTAAAAAATCCAGCTAAATTTACGCGCCTTGGAGGAAAGTTGCCAAAGGGGATTCTTCTGACAGGGGCACCTGGAACTGGAAAAACACTGCTAGCCAAGGCTATTGCTGGAGAAGCTGGTGTTCCATTTTTCTACCGTGCAGGGTCAGAATTTGAGGAGATGTTTGTTGGAGTTGGTGCTCGACGTGTAAGGTCCTTATTTCAAGCAGCCAAAAAGAAGGCTCCTTGCATTATCTTCATTGATGAAATTGATGCTGTTGGATCAACCAGGAAACAGTGGGAGGGCCACACCAAGAAGACATTGCACCAACTACTCGTTGAAATGGATGGGTTTGAGCAGAATGAGGGAATAATATTGATGGCTGCAACAAACCTACCTGATATTCTTGATCCAGCTTTAACGAGGCCTGGTAGATTTGATCGACATATTGTTGTACCGAATCCAGATGTACGTGGCCGGCAAGAAATATTGGAACTCTACCTGCAAGATAAACCTACAGCGGAAAATGTTGATATTAAAGCAATAGCTCGTGGTACCCCAGGATTCAATGGGGCAGATCTTGCGAACCTGGTGAACATTGCTGCCATTAAAGCTGCGGTTGAAGGTGCAGAGAAATTAACAGCTTCTCAGTTGGAGTTTGCAAAAGACAGAATAATTATGGGTACAGAGCGAAAAACAATGTTCGTATCAGACGAGTCAAAAAAGCTTACTGCTTATCATGAGAGCGGCCATGCAATTGTTGCCCTTAACACCGACGGTGCACATCCAATTCACAAGGCAACAATAATGCCTCGAGGATCTGCTTTAGGAATGGTTACTCAGCTTCCCTCAAGTGATGAAACATCAATAAGTAAGAAGCAGTTGTTAGCTCGTCTTGATGTTTGTATGGGAGGAAGAGTTGCAGAAGAGCTTATCTTTGGTCGTGATAATGTCACAACTGGAGCAAGTAGCGATCTTCAATCTGCTACCGAGCTTGCCCAATACATGGTTTCAAGTTGTGGGATGAGTGATACAATCGGACCAATTCATATAAAGGAAAGACCAAGTTCTGAAATGCAGTCACGTATTGATGCAGAGGTTGTAAAACTCCTTAGAGATGCATATGATCGCGTGAAAGCTCTTCTGAAGAAGCATGAGAAGGCATTACATGTGCTGGCAAATGCATTATTAGAGTGCGAGACACTTAATTCAGAAGAAATCAGGCGATTACTACTCCCTTATCGGGAAGGAAGACTGCCAGAACAACAGGAACAAGAAGAAGCAGAAGGGGATCTTGTATTGGTCTAA 2361 0.4481 MATLQTSLLFKLPFPFLFPNHSTHKPHRHFSFNPTRLRPRVLPPPLCTFQPDATTPHSDPNPTLPEPKPDSLDVELINSTENDTVAGLDSNSNESRFESVDGERLEASESEKKVSKLPIVVFLIGVWVRARERVERAFSEFFDWWPFWRQEKRLAKLISEADVNRQDAAKQSALFVELNKHSPESVIKIFEERDRAVDSKGVAEYLRALVVTNAIAEYLPDKESGKPSGIPSLLQELKQRASGNIDETFLNPGISAKQPLHVVMVDQKVSYKSRFVSEVVSTIFFTVAIGLVWFMCSAALQKYIGGLGGIGSSGVGSSSSYTPKELNKEVMPEKNVKTFKDVKGCDDAKQELEEVVEYLKNPAKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPTAENVDIKAIARGTPGFNGADLANLVNIAAIKAAVEGAEKLTASQLEFAKDRIIMGTERKTMFVSDESKKLTAYHESGHAIVALNTDGAHPIHKATIMPRGSALGMVTQLPSSDETSISKKQLLARLDVCMGGRVAEELIFGRDNVTTGASSDLQSATELAQYMVSSCGMSDTIGPIHIKERPSSEMQSRIDAEVVKLLRDAYDRVKALLKKHEKALHVLANALLECETLNSEEIRRLLLPYREGRLPEQQEQEEAEGDLVLV* 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0878 786 Pfam ATPase family associated with various cellular activities (AAA) 376 504 IPR003959 GO:0005524|GO:0016887
Psa6g0878 786 MobiDBLite consensus disorder prediction 83 103 - -
Psa6g0878 786 Pfam Peptidase family M41 586 761 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Psa6g0878 786 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 281 762 IPR005936 GO:0004176|GO:0004222|GO:0016020
Psa6g0878 786 SMART AAA_5 372 507 IPR003593 -
Psa6g0878 786 Pfam AAA+ lid domain 527 569 IPR041569 -
Psa6g0878 786 SUPERFAMILY FtsH protease domain-like 587 764 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Psa6g0878 786 CDD AAA 350 504 - -
Psa6g0878 786 Gene3D - 506 579 - -
Psa6g0878 786 Gene3D Peptidase M41 580 766 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Psa6g0878 786 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 8 779 IPR005936 GO:0004176|GO:0004222|GO:0016020
Psa6g0878 786 Gene3D - 316 505 IPR027417 -
Psa6g0878 786 ProSitePatterns AAA-protein family signature. 475 493 IPR003960 GO:0005524|GO:0016887
Psa6g0878 786 PANTHER METALLOPROTEASE M41 FTSH 106 768 - -
Psa6g0878 786 Coils Coil 719 739 - -
Psa6g0878 786 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE YME1L1 106 768 - -
Psa6g0878 786 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 338 600 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0878 Psa-Chr6 31621433 31631347 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0878 35 764 Miscellaneous Gene Families AT5G53170 75.643 0.0 1108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0878 K08955 - gmx:100815980 1188.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g0878 6 31621433 31631347 Psa6g0878 6 31621433 31631347 ECH