Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0833 ATGGGTCTCTCTTTTGGTTTTAGATTAAACCCAAAACTCAGATATACTCTTCCATTTCACTCTCCTCATTTCTTCACCAATTCATCCATCTTCCTCTCTTCTTCATCTTCTGTTGGAGGCAGGGAAGCTTTATTCAACCCTGTGAGGTTATCTTTGCTTTCAACAATTTATGAGGAATCAGAAACTTTGCACAAGGATTTTGGAAAGACGTTTGCGTTTTCTTCATCAGCATTGGAAGCTCCAGAGAAAGATTTTTTGCTTGGAGGAGATGTGACAACAAAGGTAAATAAAGGAAAGAGGTCGCTTAGTAGCGTGCGTGAAATGATCGATAACACGAAACTGCCTCATGGGGAATCGCATTTCGGTATGTTAATGGAGAATCTTGATGTTTTAGAAGAAACTTTTGCTGATTCTGAAGCATTGAGGTTGAAGAAGAATATTATATCGCAAATAGAAAAGCTTGGAGCTCTTGAGTTGTTCAATGATTGTCTAACAACATCTTTCGGAACCTCACGCGTATCGAATTGCACTAACGAAGTTCTTGAACAAGTTGAAGAGAATAAGAGAAACTGCAAATTTGATGACTATACAGGTAAAGTTATTGTCCATTCTAGCAAGAGGAAGGAAAGTAGAACAAGAAGAAAGCGAATATCTGTTTCCATTGCACCTTCGTCTAAGTCGTTGCCTTTAGAAGATAATAATCAAGAAAATACATTACGTTCTTCGCCGGCTTCTTTTGTAAAAAAAGTATCATATACTAAAAATAGAAGAATGGCGATTGCTCAAAGGGAAGTTGAAATGTCAAAAGGAGTAAAGGTTTTAGCAGAGTTAGAGAAAATGAAAACAGCGTTAGAAGAGGATACAAAGCAAGTGGTAAGCTTGAGTAGCTGGGCGGAAGCATCCGGAGTCGAGGAGAAGATGCTACAACAGCAACTGTATCATGGCTATTATTGTAGAGACGAGTTGATACGGAGTACTCGTTCGTTAGTTGTATACTTTGCCAAAAAATACCGGGGTATGGGAATAGCTTTGGAAGATTTACTTCAGGTAGGGTATATAGGTGTTCTCCAAGGAGCCGAGCGATTCGACACTACAAGAGGATACCGATTCTCAACCTATGTGCAATACTGGATAAGGAAATCAATGTCAAGAGTGGTGGCAAAATATGCTCGAGGAATCACCGTTCCTTGGTCAATGAACAAGGCGATAAGTCAGATCCAGAAAGCACGAAAAGTCTTGAAAAACACGACCATGAAATACGCAGACGATCACGAGATTGCAAATATGACAGGTCTTTCTCTGGATAAAATCAGATCAGCTAGCCATTGTCTGAGAATAGTTTCCTCAATGAATCGGAATCAAGATATAGATTATTTGGGTCAAATGGCCGATAAGTCGATAGAGTGTCCTGAAGAGACCGTCATGAAACAACACTTTAGAAAAGACATATTTGATATCCTTCAAAGCTTGGACTCGAGAGAAAGACAAATACTAATCCTACGATTCGGCCTTAACGATCACCAACCCAGGTCCCTCGAGTATATAGGGAGGATTTTCAAAGTTAGCAAAGAGTGGATAAGGAAAATAGAGCAAAAAGCTCTCACAAAACTAAGGAATGAAACAAACATTTCAATGTTGAATTACTATTTGGATCTGCAGTAG 1662 0.3917 MGLSFGFRLNPKLRYTLPFHSPHFFTNSSIFLSSSSSVGGREALFNPVRLSLLSTIYEESETLHKDFGKTFAFSSSALEAPEKDFLLGGDVTTKVNKGKRSLSSVREMIDNTKLPHGESHFGMLMENLDVLEETFADSEALRLKKNIISQIEKLGALELFNDCLTTSFGTSRVSNCTNEVLEQVEENKRNCKFDDYTGKVIVHSSKRKESRTRRKRISVSIAPSSKSLPLEDNNQENTLRSSPASFVKKVSYTKNRRMAIAQREVEMSKGVKVLAELEKMKTALEEDTKQVVSLSSWAEASGVEEKMLQQQLYHGYYCRDELIRSTRSLVVYFAKKYRGMGIALEDLLQVGYIGVLQGAERFDTTRGYRFSTYVQYWIRKSMSRVVAKYARGITVPWSMNKAISQIQKARKVLKNTTMKYADDHEIANMTGLSLDKIRSASHCLRIVSSMNRNQDIDYLGQMADKSIECPEETVMKQHFRKDIFDILQSLDSRERQILILRFGLNDHQPRSLEYIGRIFKVSKEWIRKIEQKALTKLRNETNISMLNYYLDLQ* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0833 553 Gene3D - 170 391 - -
Psa6g0833 553 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 17 551 - -
Psa6g0833 553 PANTHER RNA POLYMERASE SIGMA FACTOR SIGC 17 551 - -
Psa6g0833 553 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 395 451 IPR013324 -
Psa6g0833 553 CDD Sigma70_r4 480 538 - -
Psa6g0833 553 PRINTS Major sigma-70 factor signature 346 359 IPR000943 GO:0003700|GO:0006352|GO:0006355
Psa6g0833 553 PRINTS Major sigma-70 factor signature 370 378 IPR000943 GO:0003700|GO:0006352|GO:0006355
Psa6g0833 553 PRINTS Major sigma-70 factor signature 490 502 IPR000943 GO:0003700|GO:0006352|GO:0006355
Psa6g0833 553 PRINTS Major sigma-70 factor signature 511 526 IPR000943 GO:0003700|GO:0006352|GO:0006355
Psa6g0833 553 PRINTS Major sigma-70 factor signature 526 537 IPR000943 GO:0003700|GO:0006352|GO:0006355
Psa6g0833 553 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 262 391 IPR013325 GO:0003700|GO:0006352|GO:0006355
Psa6g0833 553 Pfam Sigma-70, region 4 487 539 IPR007630 GO:0003700|GO:0006352|GO:0006355
Psa6g0833 553 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 450 542 IPR013324 -
Psa6g0833 553 Pfam Sigma-70 region 2 322 388 IPR007627 GO:0003700|GO:0006352|GO:0006355
Psa6g0833 553 Gene3D - 472 553 IPR036388 -
Psa6g0833 553 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 319 540 IPR014284 GO:0003700|GO:0006352|GO:0006355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0833 K03093 - gmx:100802522 655.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g0833 6 29331191 29334275 Psa6g0833 6 29331191 29334275 ECH