Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0831 ATGCTTCCCCGTTTCTCTAACTACCTCCGCCACACTCCCTTCAACTCCGTCATGGCACGCGCCGTCACGTGCGCCTATCACCCTCACTTCTGTTCCGTATTCAACACCAACGATAATGCATTCCCTTCATGTAACCCTCCTCGACGTGTCTCTTTCCTCCTTTTCGATAACAGCGTCAAGAAGCAGCAGTCGCAACCGTTTCGGGGAGTCCGTGCAAACGCCGGCGGACAGAGGGAGTATCGGAAAGTCAGAAGCCGGACGCCGAAGAGTAAGCCGAAGGAGTTGGAACTCTCCGTCTCCATTTGCATTGAAGAAGATTTGCCGGATGATCCTGAAATCCTGAATATTGCAGAGATGCTTCGTCTCAATGTTCCAATGGCAATGAAACTGGCATTTGATGGTTTGAAAGGCTCAGAGTATAAAACAAGAGATACTGCTATAGATGATGTTGGTGGGTTTCAAAGTGTTGAGTTATCCGTGCTTCTTTGCAATGATGAGTTTATACGAAAACTTAATAAGGAGTGGAGAGATGAAGATCATGCTACCGATGTTCTCTCAATGTCACAACATGTACCTGGACTCGACCTTCCTATTCTTATGTTGGGTGATATTGTAATTTCTCTTGAGACAGCGGCAAGACAAGCAGAGGAAAGAGGGCACACTCTTCTTGACGAGATCCGTATCCTCATGATCCATGGCTTGTTACATCTTTTGGGGTTTGATCATGAAATAAGCGAAGAGGCTGAAGTAGAAATGGAGAAAGAAGAGGAACTCCTTTTGAAGAGTCTTGATTGGAAAGGGAAAGGGCTAATAAAAAGTGCATATGATACTGAAGCAAATTCAAATTCTCACCAAAGCAGTTCAGATGATGAATTGTCAAAAGACAGGAAGAAAGATGGCAGTCTTAGATTTTACAAACCAAAGTTCAGCCATATATTCTGTGATATGGATGGAACACTGCTGAACAGCAAAAGTCAAATTTCTACTTCAACGGTCAAGGCTTTGAGAGAGGCCTCAGCAAGGGGTGTGAAAATTGTGATAGCCACTGGAAAAGCTCGTCCAGCTGTGATAGATATTTTTAAGAGTGTGGATTTAGCTGGAAAAGATGGCATTGTTTCAGAATTTTCTCCTGGGGTTTTCGTACAGGGATTGCTTGTTTATGGTAGACAAGGTCGGGAAATATATAGGAGTAACTTAGACCCAAACGTCTGTAGAGAGGCATGTCTTTACTCTTTGGAGAATAAAGTTCCACTTATTGCATTTTGTGAAGGCCGCTGCTTATCACTTTTTCATGATCCACTTGTCGATTCACTTCATACAATATACCGTGAACCAAAGGCTGAAATCATCCCTTCAGTTGAACATTTTCTGGCATCTGCAGACATACAGAAAATGATCTTCTTAGGCACTCGCCAGAATGTGGCAGATACATTACGTCCATACTGGTCAGATGCAACAAACGGTCGTGCCAATGTAGTTCAATCCGTGCCAGACATGCTGGAAATTGTACCCTTGGGAACATCTAAAGGGAAAGGTGTAAAAGTGCTGCTGGATCACTTGGGAATTACTGCTACCGAGATAATGGCTATTGGTGATGGGGAAAATGACGTGGAGATGCTTGAGCTGGCTTCTTTAGGTATTGCACTCAGTAATGGATCAGAAAAATCCAAAGCTGTGGCTGACGTAATTGGTTTAAGCAATGATGAAGATGGTGTAGCCGACGCCATATATCGATATGCATTCTGA 1746 0.4364 MLPRFSNYLRHTPFNSVMARAVTCAYHPHFCSVFNTNDNAFPSCNPPRRVSFLLFDNSVKKQQSQPFRGVRANAGGQREYRKVRSRTPKSKPKELELSVSICIEEDLPDDPEILNIAEMLRLNVPMAMKLAFDGLKGSEYKTRDTAIDDVGGFQSVELSVLLCNDEFIRKLNKEWRDEDHATDVLSMSQHVPGLDLPILMLGDIVISLETAARQAEERGHTLLDEIRILMIHGLLHLLGFDHEISEEAEVEMEKEEELLLKSLDWKGKGLIKSAYDTEANSNSHQSSSDDELSKDRKKDGSLRFYKPKFSHIFCDMDGTLLNSKSQISTSTVKALREASARGVKIVIATGKARPAVIDIFKSVDLAGKDGIVSEFSPGVFVQGLLVYGRQGREIYRSNLDPNVCREACLYSLENKVPLIAFCEGRCLSLFHDPLVDSLHTIYREPKAEIIPSVEHFLASADIQKMIFLGTRQNVADTLRPYWSDATNGRANVVQSVPDMLEIVPLGTSKGKGVKVLLDHLGITATEIMAIGDGENDVEMLELASLGIALSNGSEKSKAVADVIGLSNDEDGVADAIYRYAF* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0831 581 SFLD Haloacid Dehalogenase 312 580 - -
Psa6g0831 581 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 152 268 - -
Psa6g0831 581 TIGRFAM TIGR00043: rRNA maturation RNase YbeY 157 263 IPR002036 GO:0004222|GO:0006364
Psa6g0831 581 CDD HAD_Pase 312 578 - -
Psa6g0831 581 SFLD C2.B: Phosphomannomutase and Phosphatase Like 312 580 - -
Psa6g0831 581 Pfam haloacid dehalogenase-like hydrolase 312 576 - -
Psa6g0831 581 Pfam Endoribonuclease YbeY 153 262 IPR002036 GO:0004222|GO:0006364
Psa6g0831 581 SUPERFAMILY HAD-like 305 579 IPR036412 -
Psa6g0831 581 Hamap Endoribonuclease YbeY [ybeY]. 98 272 IPR002036 GO:0004222|GO:0006364
Psa6g0831 581 ProSitePatterns Hypothetical cof family signature 2. 530 552 - -
Psa6g0831 581 PANTHER ENDORIBONUCLEASE YBEY, CHLOROPLASTIC 19 581 - -
Psa6g0831 581 MobiDBLite consensus disorder prediction 276 295 - -
Psa6g0831 581 Gene3D - 398 505 - -
Psa6g0831 581 Gene3D Metalloproteases ("zincins"), catalytic domain 133 265 IPR023091 GO:0004222
Psa6g0831 581 TIGRFAM Cof-subfamily: Cof-like hydrolase 312 576 IPR000150 GO:0016787
Psa6g0831 581 ProSitePatterns Uncharacterized protein family UPF0054 signature. 232 242 IPR020549 -
Psa6g0831 581 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 311 548 IPR006379 -
Psa6g0831 581 PANTHER ENDORIBONUCLEASE YBEY, CHLOROPLASTIC 19 581 IPR002036 GO:0004222|GO:0006364
Psa6g0831 581 Gene3D - 312 576 IPR023214 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0831 - - gmx:100810101 863.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g0831 6 29304282 29315715 Psa6g0831 6 29304282 29315715 ECH