Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0821 ATGGCAAACCCCTCACTCGACGACGAAACAACCAAGAAGGTTATACGACAGGTTGAGTTTTACTTCAGCGATAGCAACCTTCCCAGGGATGATTTTCTCAGAAAAACTGTCTCTGAAAGTGAAGATGGAATGGTTAGTTTGGCTTTGATTTGCTCTTTCAATCGGATGCGAAAGCATCTTAATTTGGGTGATGTTAAACCCAATGAGGTAAAAGAAGAGACTGTCAAAGCTGTTGCTGAGGTTTTGAAAAATGCTGCTTCACTCAGGCTCTCAGATGATGGGAGCAAAGTTGGCAGGATTACTGAACTTTCCAAGCCAGAAGAGGTAGTTGAGCAGGTTGAGATAAGAACAATTTCTGCATCACCATTTGAATATAATGTGAAGCTTGAAGAAGTGGAATCATTCTTTGGTCAATATGCCAAGGTCAACAGTGTTCGGCTGCCCCGTCATGTTGGAGACAAAAGATTCTTCTGTGGTACTGCCCTTGTTGAGTTTTCATCTGATGAAGAATTGCAAAATGTTTTGAAGCAAAAATTGGTGTATGCGGGTGCTGAGCTAGAACTAAAGCCAAAGAAGGAATTCGATGCAGCAAGAGAAATAGAGTTAGAAAAGCACGAAAAATGTCGTAAATCTGTGGACTCAATCCACGAGGAGGAGGACCCAGAAACAAACTATCCTAAAGGCTTACTTATAGCCTTCAAGCTAAAGGGCATTTCAGATGCTATTCCTTCAGAAAAGAATAGCACTGATGAAAAAGCCAGTGGAAATAATGGTGTCACCAAGACAGATGAACAAAATCCTTCTGAAGTTGCTGCTGCTGCTGCTGCTGCTGAGGATAGTGATCAAAAGATGTCAGAAAATGATGGCAATGATAAAGAAAACAATGGCGTGAATGAAGAAAAAGATCCTGAAACTAAAGAAAAGGAACAAGAAAACAATGAGGTGAAAGAAGAGAAGGCTGAAGTTGAAGAAAAGGGTCAAGAGAACAATGGTGTGAATGAAGGAAAGGCCACTGAAGGTGAAAAGAAGGGTCAGGAAACTGAAAAACGTTCAGCTGCTTCTTTCAAGGAAGACTCTGATGTTGTCTTACGTGAAGATTTGAAGGTTATCTTTGAGAAGTTTGGTGATGTTAAGTACATAGATTTCAAAATGGGTGCTGAGTCAGGATTCATTCGGTTTGACGTACCTGAAGCTGCTCAGAAAGCACGTGCGGCTGCAGTTCTTTCTGAAAAGGGGGGCTTGGCTGTCAAGAATTTTATCGCTATTCTAGATCCAGTGTCAGGTGAGGCTGAAAAAGAATACTGGAGCCTGCTTCGTGGTAATCAAGATAAGCGCAGAGAAAGCTTTAATAACCGAGGAGGCTTTAATAACAGAGGAAGAGGAGGAAGGCATGGTAGAGGAGGAGGAGGAGGGAGATTTTTGCGGCAGAGAGAAAATGATTCTGCAGGAGGTCGCCAAAACAAGTTTAGAAGGTATTAA 1479 0.4192 MANPSLDDETTKKVIRQVEFYFSDSNLPRDDFLRKTVSESEDGMVSLALICSFNRMRKHLNLGDVKPNEVKEETVKAVAEVLKNAASLRLSDDGSKVGRITELSKPEEVVEQVEIRTISASPFEYNVKLEEVESFFGQYAKVNSVRLPRHVGDKRFFCGTALVEFSSDEELQNVLKQKLVYAGAELELKPKKEFDAAREIELEKHEKCRKSVDSIHEEEDPETNYPKGLLIAFKLKGISDAIPSEKNSTDEKASGNNGVTKTDEQNPSEVAAAAAAAEDSDQKMSENDGNDKENNGVNEEKDPETKEKEQENNEVKEEKAEVEEKGQENNGVNEGKATEGEKKGQETEKRSAASFKEDSDVVLREDLKVIFEKFGDVKYIDFKMGAESGFIRFDVPEAAQKARAAAVLSEKGGLAVKNFIAILDPVSGEAEKEYWSLLRGNQDKRRESFNNRGGFNNRGRGGRHGRGGGGGRFLRQRENDSAGGRQNKFRRY* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0821 492 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Psa6g0821 492 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Psa6g0821 492 PRINTS Lupus La protein signature 157 175 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Psa6g0821 492 Gene3D - 334 453 IPR012677 -
Psa6g0821 492 Pfam RNA binding motif 362 453 IPR014886 GO:0003723
Psa6g0821 492 SUPERFAMILY "Winged helix" DNA-binding domain 6 104 IPR036390 -
Psa6g0821 492 ProSiteProfiles xRRM domain profile. 346 471 IPR014886 GO:0003723
Psa6g0821 492 PANTHER LUPUS LA PROTEIN-RELATED 285 489 IPR045180 -
Psa6g0821 492 PANTHER LUPUS LA PROTEIN-RELATED 2 281 IPR045180 -
Psa6g0821 492 MobiDBLite consensus disorder prediction 243 267 - -
Psa6g0821 492 MobiDBLite consensus disorder prediction 478 492 - -
Psa6g0821 492 ProSiteProfiles La-type HTH domain profile. 4 107 IPR006630 -
Psa6g0821 492 CDD LA_like_plant 10 99 - -
Psa6g0821 492 PANTHER BNAANNG34180D PROTEIN 2 281 - -
Psa6g0821 492 PANTHER BNAANNG34180D PROTEIN 285 489 - -
Psa6g0821 492 MobiDBLite consensus disorder prediction 446 492 - -
Psa6g0821 492 SUPERFAMILY RNA-binding domain, RBD 364 451 IPR035979 GO:0003676
Psa6g0821 492 Gene3D - 6 106 IPR036388 -
Psa6g0821 492 SUPERFAMILY RNA-binding domain, RBD 108 191 IPR035979 GO:0003676
Psa6g0821 492 MobiDBLite consensus disorder prediction 281 357 - -
Psa6g0821 492 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 207 IPR000504 GO:0003723
Psa6g0821 492 SMART la 8 100 IPR006630 -
Psa6g0821 492 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 177 IPR000504 GO:0003723
Psa6g0821 492 SMART rrm1_1 359 417 IPR000504 GO:0003723
Psa6g0821 492 SMART rrm1_1 117 189 IPR000504 GO:0003723
Psa6g0821 492 MobiDBLite consensus disorder prediction 243 357 - -
Psa6g0821 492 Gene3D - 107 199 IPR012677 -
Psa6g0821 492 Coils Coil 305 328 - -
Psa6g0821 492 Pfam La domain 14 84 IPR006630 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0821 K11090 - gmx:100803099 532.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g0821 6 28633245 28637032 Psa6g0821 6 28633245 28637032 ECH