Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0770 ATGTCTCGTGTGTATGTGGGTAATCTGGATTCGAGAGTCACGGAGAGGGACCTTGAAGACGAATTCCGTGTTTTTGGTGTTATTCGAAGTGTCTGGGTTGCTCGAAGACCACCTGGCTATGCTTTTATTGACTTCGATGACCGCAGAGATGCACAGGATGCTATTAGGGAATTAGATGGTAAGAGCGGTTGGAGGGTCGAGCTTTCACACAATTCTAGAACTGGTGGCGGCGGTGGTGGTGGCGGTGGTCGTGGTCGAGGAGGTGGTGGCGGTGGAGGCGGTTCTGACCTGAAGTGTTATGAGTGTGGTGAACCTGGCCATTTTGCCCGTGAATGTCGCAATCGTGGTGGTTCAGCTAGACGCCGTAGCCGTAGTCCACCTCGATTTCGCAGGAGTCCAAGTTATGGGCGAAGGAGTTTCAGTCCTCGTGGGCGGTCTCCCAGGCGCCGCAGTGTGTCACCTCGTGGACGCAGCTACAGCAGGTCACCACCTCCTTACCGTGCCCGTGAGGAGGTGCCATATGCTAATGGAAATGGCATTAGGGATCGACGCCGAAGCAGAAGTTGA 567 0.5467 MSRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKSGWRVELSHNSRTGGGGGGGGGRGRGGGGGGGGSDLKCYECGEPGHFARECRNRGGSARRRSRSPPRFRRSPSYGRRSFSPRGRSPRRRSVSPRGRSYSRSPPPYRAREEVPYANGNGIRDRRRSRS* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0770 188 MobiDBLite consensus disorder prediction 66 93 - -
Psa6g0770 188 ProSiteProfiles Zinc finger CCHC-type profile. 98 114 IPR001878 GO:0003676|GO:0008270
Psa6g0770 188 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Psa6g0770 188 Gene3D - 1 98 IPR012677 -
Psa6g0770 188 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RSZ22A-LIKE ISOFORM X1 2 180 - -
Psa6g0770 188 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Psa6g0770 188 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 180 - -
Psa6g0770 188 Pfam Zinc knuckle 98 113 IPR001878 GO:0003676|GO:0008270
Psa6g0770 188 MobiDBLite consensus disorder prediction 113 188 - -
Psa6g0770 188 CDD RRM_SRSF3_like 3 71 - -
Psa6g0770 188 Gene3D - 99 154 - -
Psa6g0770 188 SMART c2hcfinal6 98 114 IPR001878 GO:0003676|GO:0008270
Psa6g0770 188 SUPERFAMILY RNA-binding domain, RBD 3 93 IPR035979 GO:0003676
Psa6g0770 188 SMART rrm1_1 3 69 IPR000504 GO:0003723
Psa6g0770 188 SUPERFAMILY Retrovirus zinc finger-like domains 89 116 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0770 Psa-Chr6 27027751 27030742 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0770 K12896 - gmx:100790689 221.476