Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0769 ATGTATGAACCAAACAACATTCTCATAACTGGTGCTGCTGGTTTCATAGCCTCACATGTGACCACTAGACTAATCAACAGATATCCTAACTACAACATTGTAGCACTTGATAAGCTAGATTATTGCTCAACTTTCAAGAATCTTCAACCATGCACTTCATCACCAAAGTTCAAATTCATCAAAGCTGATATAGCTTCTGCTGATATTGTGAGTCATATATTGATAGAAGAGGAAATAGACACTATTATGCATTTTGCAGCACAGACTCATGTTGATAATTCATTTGGAAACTCTATGGAATTCACTTACAATAACATATATGGAACACATGTTCTTCTTGAAGCATGTAGGGTTACAAAGTGTGTTAAGAGGTTCATTCATGTTAGTACTGATGAGGTTTACGGTGAGAGCGATCTAGATAGCGATATCGGAAACCACGAGACGTCTCAACTTTTACCGACGAATCCTTATTCTGCAACAAAAGCTGGTGCTGAAATGTTGGTTATGGCCTATCATAGATCCTATGGTCTTCCTATTATAACTTCTAGAGGGAATAATGTTTATGGTCCTAACCAGTATCCTGAAAAGCTTGTTCCTAAATTCATTTTGCTTGCTATGAAAGGCGAAAAGTTACCGATTCATGGCGATGGATCGAATGTGAGAAGCTATCTTCATTGTGGTGATGTAGCAGAAGCATTTGATGTTATACTTCATAAAGGAGTGATAGGTCAAGTTTATAATATTGGAACTAAGAAAGAAAGAAGTGTGTTAGATGTAGCTGAAGAAATTTGCAAGTTGTTTAAATTGGATTCTAAACAAGCGATTCAGTTTGTTCAAGATAGGCCTTTCAATGATAAAAGATATTTTTTGGATGATCAAAAGCTTAAGAAGCTTTGTTGGGAGGAGAAAACTAGTTGGGAGGAAGGACTTAAGATGACAATTGATTGGTACAAGAATAATCCGGATTGGTGGGGCGATGTATCGACCGCGTTGAATCCGCATCCGCGTTTCTCAGCGATCAACCTATCCGACGAACCTCAATGGTCTTTTCAATACGGATACTCGAGGCTTTTGAGGTCGGTTACGGAAATCGGACGAAGAGAATCGGGAATTAAGTTTTTGATATATGGTAAGACAGGTTGGATTGGTGGATTGTTAGGAAAGATTTGTGATGAGGAGAGGATTTCTTGGGAGTATGGGAGAGGGAGATTACAAGATAGGAGATCAGTTTTGGAGGATGTGAAGAGGGTTAGGCCAACACATGTTTTGAATGCAGCTGGTGTGACTGGAAGGCCTAATGTTGATTGGTGTGAATCACATAAAGTTGAAACTATAAGGACTAATGTTGTAGGGACATTAACTTTGGCTGATGTTTGCAAAGAAAGTGATTTGTATGTAATGAATTTTGCAACTGGTTGCATATTTGAGTATGATAAAGAACATCCTCTTGGATCAGGTATTGGATTCAAGGAGGAAGATACACCAAATTTCCTTGGTTCCTTTTATTCAAAAACCAAAGCCATGGTGGAGGAGCTATTAAAAGAATATGACAATGTTTGCACATTGAGAGTAAGAATGCCAATATCATCAGATCTAAGCAATCCAAGAAACTTCATAACAAAGATTAGTCGATACAACAAGGTTGTAAACATACCTAATAGCATGACAGTGCTAGATGAGCTCTTACCAATATCAATTGAGATGGCAAAGAGGAGCTTAAAAGGGATATGGAATTTCACAAATCCAGGAGTAATAAGTCACAACGAGATACTAGAATTGTATAGGGATTACATTGATCCTTCATTTAAATGGAACAATTTTGATTTGGAGGAACAAGCTAAGGTAATTGTTGCACAAAGAAGCAACAATGAAATGGATGGTTCTAAGCTCAAAAACGAGTTTCCTGAATTGTTGTCTATCAAAGATTCTATTATCAAGTTTGTGTTTGAGCCTAACAAGAAAACTTGA 1968 0.374 MYEPNNILITGAAGFIASHVTTRLINRYPNYNIVALDKLDYCSTFKNLQPCTSSPKFKFIKADIASADIVSHILIEEEIDTIMHFAAQTHVDNSFGNSMEFTYNNIYGTHVLLEACRVTKCVKRFIHVSTDEVYGESDLDSDIGNHETSQLLPTNPYSATKAGAEMLVMAYHRSYGLPIITSRGNNVYGPNQYPEKLVPKFILLAMKGEKLPIHGDGSNVRSYLHCGDVAEAFDVILHKGVIGQVYNIGTKKERSVLDVAEEICKLFKLDSKQAIQFVQDRPFNDKRYFLDDQKLKKLCWEEKTSWEEGLKMTIDWYKNNPDWWGDVSTALNPHPRFSAINLSDEPQWSFQYGYSRLLRSVTEIGRRESGIKFLIYGKTGWIGGLLGKICDEERISWEYGRGRLQDRRSVLEDVKRVRPTHVLNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCKESDLYVMNFATGCIFEYDKEHPLGSGIGFKEEDTPNFLGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLSNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRSLKGIWNFTNPGVISHNEILELYRDYIDPSFKWNNFDLEEQAKVIVAQRSNNEMDGSKLKNEFPELLSIKDSIIKFVFEPNKKT* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0769 655 Pfam GDP-mannose 4,6 dehydratase 8 313 IPR016040 -
Psa6g0769 655 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 369 632 IPR036291 -
Psa6g0769 655 CDD dTDP_HR_like_SDR_e 372 644 - -
Psa6g0769 655 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 2 653 - -
Psa6g0769 655 PANTHER TRIFUNCTIONAL UDP-GLUCOSE 4,6-DEHYDRATASE/UDP-4-KETO-6-DEOXY-D-GLUCOSE 3,5-EPIMERASE/UDP-4-KETO-L-RHAMNOSE-REDUCTASE RHM3-LIKE 2 653 - -
Psa6g0769 655 CDD dTDP_GD_SDR_e 6 322 IPR005888 GO:0008460|GO:0009225
Psa6g0769 655 Pfam RmlD substrate binding domain 372 542 IPR029903 -
Psa6g0769 655 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 2 328 IPR036291 -
Psa6g0769 655 Gene3D - 363 655 - -
Psa6g0769 655 Gene3D - 7 311 - -
Psa6g0769 655 Gene3D - 198 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0769 Psa-Chr6 27017939 27020962 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0769 6 317 Miscellaneous Gene Families AT1G02000 25.146 1.66e-19 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0769 K12450 - gmx:100776241 1226.46