Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0767 ATGATTTACCTTCGCCGGAAATTCTTCTCCGCCACCACTCTCCGCCACTTCATGTTTCAACTCAGATCGTTTCACAATCAGTTAATCTCGCCGCCAAATGTTAACTTATCCAACTCCGCCGCCGCCGCAAGCCGTAACTGTTTTCCCATTCGTTATTTAGGTGTTTTCGACAATGCCACTAAATTGAAGTCCGTCACGTCCGTTCATGGTGTCAGTATTCCGTTTCCGGCTAATGGCGTTGGAAGGAGCTCGTCGTTCTCGTCCGCCGCTGCACCGGAGAAGAATAAACGGAAGAAAACTGTAAAATCTGTTGCTGTTCGTGAAAAACCAGCTGCTAGTTCCAGTGAACCAGCTCCCGAAGAAATTGAAAATGTGGATTTAGGGAAAACTGGTTTGAGTGAAGAGTCCAATTCCAAAATTACCGCTGCTAAAAAGAAGAAGAAGAAGCCGGTGCAGAGTAAGAAGAAAGACGCCACCGATTTGTCGCAAGTGGTTGCTGAAGAAGTTTCTAGAAAATCATCTTCCAAAGGGAAGAAGACTAATTTAAAGGAGAGTTTGTCCGTTAGCACTTCAAAAGAAGTACACGATGATTCTACTTCTACAAGGTCAAAGAAGAAGGATGTACCGGAGAAGCCGCTATGGAAATTTACGGGAAAACCACTGTATCCACCCGTGGGAAAGTCTGTGGTTGTTGTGGAGTCTGTAACGAAGGCAAATGTTATTCAGAGATACCTTGGCGATATGTATAAGGTCTTGCCAAGCTATGGTCATGTAAGAGACTTGGCTGCAAGGTCTGGATCTGTGCGGCCCGACAATGATTTTAGTATGGTTTGGGAAGTTCCATCATCTGCCTGGACTCACCTAAAGAGCATCAATGTTGCATTGAACGGAGCAGAAACTCTTATTCTGGCATCTGATCCTGATCGCGAGGGAGAGACTATTGCCTGGCACATTATTGAGATGTTACAACAACAGGGAGCTCTGCACGATAATATCTTTCTGGCTAGAGTTGTCTTTCATGAAATAACTGAGAAAGCTATAAAAACTGCTTTGCAAGCACCACGAGAGATTGATGTGAATTTGGTTCATGCGTACCTTGCACGGAGAGCCCTTGATTATTTGATTGGGTTTAACATTTCACCATTACTATGGAGGAAGTTACCGGGTTGCCAATCAGCAGGAAGAGTTCAATCTGCTGCACTTTCTCTTATATGTGATAGGGAAATGGAAATTGATCAATTTAAACCCAAGGAGTATTGGACTATGGAGGCCAAGTTTAACATTAAAGAGCGGAGATTAAACAAGGACTTAACATTTCTTGCTCACCTGACTAGTTTTGATTCAAACAAGTTGAATCAATTTTCGATTACTTCTGGTGGGGAGGCAAGTGACGTTAAAGGCAAAATAAACTCTGCAGAGTTTCGGGTTATTAGCCTAAAAAGACACAAAGTTAGAAGAAATCCTCCAACACCTTATATATCATCAACACTTCAGCAAGATGCTGCAAACAAATTGAATTTCTCAGCTAGTCACACAATGAAGCTCGCACAGAAACTCTACGAGGGAGTTGAACTGCCTAATGGTGTAGCAGTGGGTTTGATAACATTCGTCAGAACTGATGGACTCCATATTTCTGATGAAGCTGTTGCCAGTATTCGCTCCCTTATCATTGAAAGGTATGGACAAAATTTTGTTGCACAAAGTCCACCAAAGTATTTTAAAAAGGTGAAAAATGCACAAGAAGCCCATGAAGTCATTAGACCGACTGACATATGCAAGTTACCATCAACGCTGGTTGGGGTACTCGATGATGAATCCTTGAAGCTATACACACTTATTTGGTCAAGAACAGTTACAAGTCAGATGGAACCGGCTATTCTTGAGAAGATACAACTTGATATTGGAAATGCTGATCAATCTATTATGTTACGGTCTCCTAGCTCAAGGGTTGAGTTTCCTGGACACCGGGCAGTTCTTACGGACATTGTAACTGAAGCTGGACAAGATAGAGAAAGTGACGGATCCAATCATGATGTAGCTTTTGAGGTTTTAAATTCTTTAAAGACAGATGATCTGTTACATCTTGTTCAAACTGAGGCGTGTCAGCACCATACACAACCGCCACCACGTTACTCCGAAGCATCATTGATTAAGAGGCTTGAAGAGCTTGGGATTGGAAGACCTTCAACATATGCAAGCACAGTAAAAGTATTACAGGATAGAAACTACGTGACAGTGAAAAATCGTGTTCTCTTTCCAGAATTTCGTGGTCGCATGGTTTCAGCTTTTCTGTCGCATCATTTTTCAGAGGTCACAGACTACAGTTTCACTGCTGATATGGAAACTGAGCTTGATAATGTTTCTGCTGGAATAACCAAATGGAAAGGCCTCCTAGGAGATTATTGGACTCGGTTTATATCATATTGTGAGCGTACTTCTAATGTTCATACTCATCAGGTTGAGAAGATGTTAGAAAAAAAATTTGTGGATTATTTATTTGGTTCTCTCCCAGATAAGAGTCGGTCGTGTCCAAGTTGTATGGAAGGCACGCTGATATTTAGAGTAAGTAGATTTGGTAGCGGCTACTTTATAGGTTGCGATCAGCATCCGAGGTGCAAGTACATTGCTAAAACATTATATGCCGATGAGGAGGAGGAAGATACACCGGAGCCAAACACTATGATAGAGGAACCAAAACTCCTAGGTTTTAATAGTGGTTCAAATGAAAAGATTCTTTTGAAAAGTGGTCCTTATGGAATCTATGTTCAGCTCGGAGAAGACAGGAAGGGATACATACCTAAAAGAGCCTCTGTTCCTCATGTAAAGGATTTGGACTCTGTCACACTTGAAGATGCACTTGCGTTGCTACAATATCCATTGACATTGGGTAAGCATCCTAAGGATGAACATCCTATCATATTAAAGGTTGCAAAGGCTGGTTATTCTATTAGACATCGACACAAAATTGCTCCCGTTCCTAAGAATATGAAGCCAAGTGAAATCACCTTGGAAAAGGCCCTGGAACTTTTATCAGGCAGTGATGTGAGACAAGTTGGTCGGCCTAAAGGCAAACCTAAAACTGAAGAAGTTGAAGCTATTGAAGTTTTCTAA 3111 0.4182 MIYLRRKFFSATTLRHFMFQLRSFHNQLISPPNVNLSNSAAAASRNCFPIRYLGVFDNATKLKSVTSVHGVSIPFPANGVGRSSSFSSAAAPEKNKRKKTVKSVAVREKPAASSSEPAPEEIENVDLGKTGLSEESNSKITAAKKKKKKPVQSKKKDATDLSQVVAEEVSRKSSSKGKKTNLKESLSVSTSKEVHDDSTSTRSKKKDVPEKPLWKFTGKPLYPPVGKSVVVVESVTKANVIQRYLGDMYKVLPSYGHVRDLAARSGSVRPDNDFSMVWEVPSSAWTHLKSINVALNGAETLILASDPDREGETIAWHIIEMLQQQGALHDNIFLARVVFHEITEKAIKTALQAPREIDVNLVHAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDQFKPKEYWTMEAKFNIKERRLNKDLTFLAHLTSFDSNKLNQFSITSGGEASDVKGKINSAEFRVISLKRHKVRRNPPTPYISSTLQQDAANKLNFSASHTMKLAQKLYEGVELPNGVAVGLITFVRTDGLHISDEAVASIRSLIIERYGQNFVAQSPPKYFKKVKNAQEAHEVIRPTDICKLPSTLVGVLDDESLKLYTLIWSRTVTSQMEPAILEKIQLDIGNADQSIMLRSPSSRVEFPGHRAVLTDIVTEAGQDRESDGSNHDVAFEVLNSLKTDDLLHLVQTEACQHHTQPPPRYSEASLIKRLEELGIGRPSTYASTVKVLQDRNYVTVKNRVLFPEFRGRMVSAFLSHHFSEVTDYSFTADMETELDNVSAGITKWKGLLGDYWTRFISYCERTSNVHTHQVEKMLEKKFVDYLFGSLPDKSRSCPSCMEGTLIFRVSRFGSGYFIGCDQHPRCKYIAKTLYADEEEEDTPEPNTMIEEPKLLGFNSGSNEKILLKSGPYGIYVQLGEDRKGYIPKRASVPHVKDLDSVTLEDALALLQYPLTLGKHPKDEHPIILKVAKAGYSIRHRHKIAPVPKNMKPSEITLEKALELLSGSDVRQVGRPKGKPKTEEVEAIEVF* 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0767 1036 PANTHER BNAA01G05990D PROTEIN 87 1024 - -
Psa6g0767 1036 CDD TOPRIM_TopoIA_TopoI 227 354 IPR034149 -
Psa6g0767 1036 MobiDBLite consensus disorder prediction 84 209 - -
Psa6g0767 1036 Pfam Topoisomerase C-terminal repeat 907 966 IPR025589 -
Psa6g0767 1036 MobiDBLite consensus disorder prediction 189 209 - -
Psa6g0767 1036 ProSiteProfiles Toprim domain profile. 227 343 IPR006171 -
Psa6g0767 1036 PRINTS Prokaryotic DNA topoisomerase I signature 301 314 IPR013497 GO:0003677|GO:0003916|GO:0006265
Psa6g0767 1036 PRINTS Prokaryotic DNA topoisomerase I signature 391 409 IPR013497 GO:0003677|GO:0003916|GO:0006265
Psa6g0767 1036 PRINTS Prokaryotic DNA topoisomerase I signature 531 540 IPR013497 GO:0003677|GO:0003916|GO:0006265
Psa6g0767 1036 PRINTS Prokaryotic DNA topoisomerase I signature 609 625 IPR013497 GO:0003677|GO:0003916|GO:0006265
Psa6g0767 1036 PRINTS Prokaryotic DNA topoisomerase I signature 724 738 IPR013497 GO:0003677|GO:0003916|GO:0006265
Psa6g0767 1036 Pfam DNA topoisomerase 357 797 IPR013497 GO:0003677|GO:0003916|GO:0006265
Psa6g0767 1036 Pfam Toprim domain 229 342 IPR006171 -
Psa6g0767 1036 Gene3D Bacterial Topoisomerase I, domain 1 835 886 - -
Psa6g0767 1036 SUPERFAMILY Prokaryotic type I DNA topoisomerase 227 850 IPR023405 -
Psa6g0767 1036 SMART toprim5 227 327 IPR006171 -
Psa6g0767 1036 Gene3D Topoisomerase I, domain 4 488 624 IPR013826 -
Psa6g0767 1036 CDD TOP1Ac 360 805 IPR013497 GO:0003677|GO:0003916|GO:0006265
Psa6g0767 1036 Gene3D Topoisomerase I, domain 3 413 708 IPR013825 -
Psa6g0767 1036 PANTHER DNA TOPOISOMERASE, TYPE IA, CORE 87 1024 IPR000380 GO:0003677|GO:0003917|GO:0006265
Psa6g0767 1036 SMART topIban2 333 421 IPR003601 GO:0003677|GO:0003916|GO:0006265
Psa6g0767 1036 Pfam Topoisomerase DNA binding C4 zinc finger 841 877 IPR013498 GO:0003677|GO:0003916|GO:0005694|GO:0006265
Psa6g0767 1036 Gene3D - 225 363 - -
Psa6g0767 1036 Hamap DNA topoisomerase 1 [topA]. 227 986 IPR028612 GO:0003677|GO:0003916|GO:0006265
Psa6g0767 1036 Gene3D Topoisomerase I, domain 2 367 802 IPR013824 -
Psa6g0767 1036 SMART topIaneu2 480 761 IPR003602 GO:0003677|GO:0003916|GO:0006265
Psa6g0767 1036 TIGRFAM topA_bact: DNA topoisomerase I 230 876 IPR005733 GO:0003677|GO:0003917|GO:0006265
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0767 Psa-Chr6 26918093 26940578 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0767 - - gmx:100788049 1380.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g0767 6 26918093 26940578 Psa6g0767 6 26918093 26940578 ECH