Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0755 ATGCTTCTAACTCACGCTTTCTCTTCCTTCCACATAAAGCCACTCCATTCCTCATACATTCCAATTTCTTCTTCTTCTTCTTCTCCAATACGACGTCGTTCGGTCAGGACCACCACTACTCGCAAATCAAATTTCAACATCCTCACCTCACGTATAGTTGAACTCACTCGCAGAAAACAGCTTCGTCAGATTTTGAATGAAATTGAGGTTGCGAAGAAACGTTTTGGGAAGTTGAATACGATTGTGATGAATGCGGTCATGGAGGCTTGTGTTCGTTGCGGTGATATCGATTCGGCTGTTAGGATTTTCGAGGAGATGAAATGTCCAGAAGCTTGTGGTGTGGATACTGTCACATGCGCTACACTTTTGAAGGGTTTAGGCAAGGCACGGAGATTTGATGAAGCTTTTCGATTGCTTGAATCTGTCGAAAATGGTACTGCTGTGGGAAGTCCAAAGTTGTCAGCACCATTGGTCTTTGGTTTGCTAAATGCCTTAACAGAAGCAGGAGACTTGCGTCGTGCAAATGGCCTCCTTGCCTGTTATGGTTTTGTGCTTCGTGATGGCGAACATTTTTCAGTCTCAGTATACAACCTAATAATGAAGGGGCATATAAACTCAGGCTGTCCCGACGCTGCAATAAACATGCTCAATGAAATTTTACATCAAGGAATAATGCCTGACAGGATCACGTATAACACACTCATTTTAGCATGTGTTCAGAGTGAAAAGTTGGATTTTGCCATGCAATTATTTGCAGAAATGAAGGAAAAAGCGCAGAAATTTTTCCGTGATGATCTGTTTCCAGATATCGTTACATACACAACATTGCTCAAGGGTTGTGGGCAGGCAAATGATCTCGTTTCAGTTGGGCAAATAGTGCTGGAAATGAAATCTCGTTCTGAGTTATACATTGATAGAACTGCTTACACTGCAATAGTTGATGCTTTACTAAAATGTGGCTCAGATAAGGGTGCTCTGTGTATATTTGGAGAAATACAGAAGCAGGTTGGTTTGAAGCCAGAGTTGAGACCAAAGCCTCATCTCTATCTTTCCATAATGCGGGCCTTTGCTTTTCAAGGAGACTATCATCTTGTTAAAAATTTGCATAAGCGGATTCTGCCAGATACTACAGGAACCATCTTAGCAGTTTCCCAAGAAGAAGCCGACCACCTTCTAATGGAAGCAGCCCTGAACGCTGGCCAGGTTGACGTCGCTATTAAAACTCTTACATATATTGTTTCAAGATGGAAGGGCATTTCCTGGACAAGTCGTGGAGGCATGGTTGCTTCTCGTATTGAGGCCTTGTTGGGGTTCTCAGCATCTTTATTCAATCCTTTCTTACTTCCTCAGGTTTCACCTTCTGAACCGGTTGAGGGTTTCATGATACCATTTGAAGCAACTCGGCCACTACAAGGTACCGTAAAGCTGAAGAATGTGGTAACACGTTTCTTCAATGATGCAGTAGTTCCTATTGTAGATGAGTGGGGAAGTTGTACTGGGTTGTTGCACCGCAAAGACTGCAATCAGTTGGATGCTTCACTTTCAACAATGATGAGGAGCCCTCCTCCCAGTGTTACGGCTTTGACATCTGTTGGTCATGTAATTGATTTAATTTTGGAGAAGGGCTACCCAATGGTTATCATTGTAAATTACACCGACGCGTATGCTACTTCATATGGCAGTAGAGCAGTTGGTGTTTTTACATTAGAACAATTGAATAGACTTATAAAACCCGTATCTGAAGGGAAAGGGACAGACCTTTCACTTTGCAGAAGATGA 1779 0.4261 MLLTHAFSSFHIKPLHSSYIPISSSSSSPIRRRSVRTTTTRKSNFNILTSRIVELTRRKQLRQILNEIEVAKKRFGKLNTIVMNAVMEACVRCGDIDSAVRIFEEMKCPEACGVDTVTCATLLKGLGKARRFDEAFRLLESVENGTAVGSPKLSAPLVFGLLNALTEAGDLRRANGLLACYGFVLRDGEHFSVSVYNLIMKGHINSGCPDAAINMLNEILHQGIMPDRITYNTLILACVQSEKLDFAMQLFAEMKEKAQKFFRDDLFPDIVTYTTLLKGCGQANDLVSVGQIVLEMKSRSELYIDRTAYTAIVDALLKCGSDKGALCIFGEIQKQVGLKPELRPKPHLYLSIMRAFAFQGDYHLVKNLHKRILPDTTGTILAVSQEEADHLLMEAALNAGQVDVAIKTLTYIVSRWKGISWTSRGGMVASRIEALLGFSASLFNPFLLPQVSPSEPVEGFMIPFEATRPLQGTVKLKNVVTRFFNDAVVPIVDEWGSCTGLLHRKDCNQLDASLSTMMRSPPPSVTALTSVGHVIDLILEKGYPMVIIVNYTDAYATSYGSRAVGVFTLEQLNRLIKPVSEGKGTDLSLCRR* 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0755 592 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 79 109 IPR002885 -
Psa6g0755 592 ProSiteProfiles CBS domain profile. 517 587 IPR000644 -
Psa6g0755 592 Pfam PPR repeat family 229 280 IPR002885 -
Psa6g0755 592 Gene3D Tetratricopeptide repeat domain 23 150 IPR011990 GO:0005515
Psa6g0755 592 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 192 226 IPR002885 -
Psa6g0755 592 TIGRFAM PPR: pentatricopeptide repeat domain 229 257 IPR002885 -
Psa6g0755 592 TIGRFAM PPR: pentatricopeptide repeat domain 195 227 IPR002885 -
Psa6g0755 592 TIGRFAM PPR: pentatricopeptide repeat domain 83 107 IPR002885 -
Psa6g0755 592 TIGRFAM PPR: pentatricopeptide repeat domain 117 141 IPR002885 -
Psa6g0755 592 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 227 261 IPR002885 -
Psa6g0755 592 PANTHER OS09G0431600 PROTEIN 17 586 IPR044781 -
Psa6g0755 592 CDD CBS_pair_SF 489 550 - -
Psa6g0755 592 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 115 145 IPR002885 -
Psa6g0755 592 Gene3D Tetratricopeptide repeat domain 260 435 IPR011990 GO:0005515
Psa6g0755 592 Gene3D Tetratricopeptide repeat domain 160 259 IPR011990 GO:0005515
Psa6g0755 592 Pfam PPR repeat 82 107 IPR002885 -
Psa6g0755 592 Pfam PPR repeat 117 141 IPR002885 -
Psa6g0755 592 Pfam PPR repeat 195 224 IPR002885 -
Psa6g0755 592 SUPERFAMILY CBS-domain pair 485 574 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0755 Psa-Chr6 26719397 26728542 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0755 115 373 Glycosyltransferase AT1G05670 22.648 3.32e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0755 - - mtr:MTR_1g009650 968.763
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g0755 6 26719397 26728542 Psa6g0755 6 26719397 26728542 ECH