Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0727 ATGAGCAGAGCAGCGAGTCGAAGTAAAAATAAAAGAAAGAGACAAGGGGATGATGATGATGCTGGAACTTTTGAAATATGGAGGAAAATACACAAAACAGGTGAGGTAAATGAAGATGAGATGAATCAACTGTATATGATTACGAAGCCAGTTTGTTCAGGCTGTCGTGTCAATACTAAAGACAACCCGAATTGCTTTTGCGCATTGGTTCCAGCTCCAAATGGAACCCGAAAGTCTGGCATATGGCAGAAGATATCTGATTTTGTTGAGAGTCTTGGCTTTGACCCAAACACGGAACTTCGTGCATCTGCTGATTCACCTGCAGGACTCACAAATCTTGGAGCAACGTGTTATGCTAATAGCATACTCCAATGCTTGTATATGAATAAACATTTCCGAGAAGGATTGTTTTCTCTAGAACCAGATGTTTTACAGCAACAACCAGTGTTAGATCAACTGGTTCGCCTTTTTGCACAGTTGCATTTAAGTAAAAAGGCTTTCATAGATTCTTCTCCATTTGTAAAAACGCTGGAGTTAGACAATGAAGTTCAGCAGGATAGCCATGAGTTCATGACATTGCTTCTGTCATTACTTGAGCGTTGCCTTAGCCATTCCAGAATTTCCAAGGCAAGAACAATAGTTCAAGATCTTTTCCGGGGAAGTGTGTCTCATGTGACAACGTGTTCACAATGCGGAAGAGACTCAGAAGCTTCTTCCAAAATGGAAGACTTTTATGAGTTGGAGTTGAATGTCAAGGGATTGAAAAGTTTAGATAAGAGCTTAGATGATTACTTCACTGTTGAGGAGCTTAATGGAGACAATCAATATTTTTGTGAGTCGTGTAAAACAAGGGTTGATGCTACTCGCAGCATCAAGCTGCGGACATTACCCGATGTGCTTAATTTTCAGCTGAAGCGCTATGTCTTCCTTCCAAAGACAACAACAAAGAAGAAAATTACTTCTTCATTTTCATTTCCTGCTGAACTTAGTATGAACCACAGACTCTCTGAGCCATCTCAGTCTGAATTGATATATGACTTGTCAGCTGTACTGATACACAAAGGAACTGCAGCTAATAGTGGTCATTACATTGCTCACATCAAGGATGAAAATACTGGGCATTGGTGGGAATTTGATGATGAGCTTGTTACTAGCTTGGGTAGTTGTCCATTTGCCGAAGAGGCTTCATGCTCTGCCTCTAAATCTGTTAAGAATGATGTAGATCATTCAAATTTCTCTGAAGCAAGGGTAGATGACAGTAATGGAAATGGTTTAAGTGTCAAAGTTTCACAATCTTCACCTATGGAGACATTTTCATCTAGTGATGCATATATGTTGATGTACCATCTTAAGAATACCAAACGGTTTAGTGAGAATGGGGGAATGGTTAGTAGTGCTAACCCTACTGAAAGAGATGCTGATGCAGTTATTGCACAAGTAAATGGTTGTCTTCCTTCTCATTTTTGCGAAGAGATTCAAAATTCCAATGCCTCGTTTCTCGATGCTTGCCAGCAGTACAACCACAGGAAAGAGGTAGAATTGAGTTGCATCAATGAAAGGAGAGAAGAAGTTCCTTCTGTTTTAGCTGAAGCTCCTGTTCAACCACTGGAGCAACCATTTTTTTGGATTTATAGTGACTGGCTTCGCCAATGGGCTGAAAATGTTACTCCAACGACTATTGACAACACGCCTATCCAATGTTCACATGGTAAAGTTCCAGTTTCAAAGGTTACCTCAATGAAGCGTCTGTCTTCTAAAGCATGGAATAGGTTATTGTCTAAGTATGGTGGGGGACCAACACTTTCTCACGATGATCGCTGTTGGGATTGTCTGATTGATGGGGCTCGGAATGTCGTGTCAGCTGACACTTATCGGGATCGAAGAGAATCATTTAAGCAACTTGCACGGGACATTCTTGATGGAAAAAAAGAAGATGGAAATAACTATGTGTCTAGATCATGGTTGCAGCAATGGTGGAAGAGAAAAATTGCCGATGCTCCATCTGAAGCTGATGCTGGACCAACAGCAGCTATTAGTTGTCCACATGGACAACTCATGCCTGAGCAAGCAACTGGCGCTAAGCGGGTGCTTGTTCCTGAGGATTTTTGGCTATTCTTATATGAAGATGCCACTTCTGTACAAAACAACGATCTTCTGTTCTGCCCTACTTTTCCTTTAGGCACGGTAGAGTGTTCCGAATGCAGTAATGAATTATCTGAAGTGGCTTGCATGGAGGACTCTATGAGGTTATTCAAACAAAGGCAGCGCCAGAGTCATGAGAAACTTTTCAGTGGGAAAAGTACGCCACTCTCTTTAGAATGCAAGTACTTCTTAGTTCCTTCCTCTTGGATTTCAAAATGGAGAAGTTACATCAGCCCAGCTGTCAAGAATTCTGATAAACCTGAAACATTAGATGTGGTAGTTGGTTCACTGATTTGTGAAAAGCACTCGCGACTCATTGAAAGGCCTTCTGAACTGGTTTTCAGACGCGGTACTATAATTCAAAAAGAGTCTTCTGCAGGTGAGTTAACCTTCATATCTGAGAATGATTGGAAATGTTTCTGCGAAGAATGGGGTGCTACAGAGACCAAAGGGATATCTGTAAAGATTGAGAATATTAATGATTCTATGAATGCTATACCTGGATCTTGTAAAGAGACGGCGATATGTGAGGACCAGTTGGCCAGTTGGGATAAGGTGAATAATGAAAGTGGGAACGCTCAAATTTTGATCAAGACTTGTCCTGAGGTTTGTGAAAGTTGCATTGGCGAAAAGGAAAGCTGTGAGTTAATGCATAAGCTTAATTATTGCAATGAGGATATATTTATAGTTCTTGTTCGTGGAAAGGAGGTCCCTAGATCAATCTTGGAGGCTTCAAAAGTTGTTGAAACAGATCGTAGAGTTTCTAAGCGCTCCCGAAAGACTAAAAGTGGGAGTTCAATTAGTCTTAAAGTTTCTGCTTCAACATCAATTTACCAGCTAAAAATGATGATATGGGAATCCTTTGGGGTGGTCAAAGAAAACCAGATACTACAAAAAGGTGATACAACAATTGATAACAATGACGAAAATGCTACGCTTGTGGATGTTAACATATTTGCTGGAGATCAGATTATTGTGAGGGACTCTGAGATCCATGAAAATCGAGACATTGCTGATGAGCTGTGTACTGAGAAAAAGGATACACAGAATACTGAGGAAGGGTTTCGTGGAACACTTTTGAGTTCAAATCTTTCATCTTTTGTTTAG 3249 0.4057 MSRAASRSKNKRKRQGDDDDAGTFEIWRKIHKTGEVNEDEMNQLYMITKPVCSGCRVNTKDNPNCFCALVPAPNGTRKSGIWQKISDFVESLGFDPNTELRASADSPAGLTNLGATCYANSILQCLYMNKHFREGLFSLEPDVLQQQPVLDQLVRLFAQLHLSKKAFIDSSPFVKTLELDNEVQQDSHEFMTLLLSLLERCLSHSRISKARTIVQDLFRGSVSHVTTCSQCGRDSEASSKMEDFYELELNVKGLKSLDKSLDDYFTVEELNGDNQYFCESCKTRVDATRSIKLRTLPDVLNFQLKRYVFLPKTTTKKKITSSFSFPAELSMNHRLSEPSQSELIYDLSAVLIHKGTAANSGHYIAHIKDENTGHWWEFDDELVTSLGSCPFAEEASCSASKSVKNDVDHSNFSEARVDDSNGNGLSVKVSQSSPMETFSSSDAYMLMYHLKNTKRFSENGGMVSSANPTERDADAVIAQVNGCLPSHFCEEIQNSNASFLDACQQYNHRKEVELSCINERREEVPSVLAEAPVQPLEQPFFWIYSDWLRQWAENVTPTTIDNTPIQCSHGKVPVSKVTSMKRLSSKAWNRLLSKYGGGPTLSHDDRCWDCLIDGARNVVSADTYRDRRESFKQLARDILDGKKEDGNNYVSRSWLQQWWKRKIADAPSEADAGPTAAISCPHGQLMPEQATGAKRVLVPEDFWLFLYEDATSVQNNDLLFCPTFPLGTVECSECSNELSEVACMEDSMRLFKQRQRQSHEKLFSGKSTPLSLECKYFLVPSSWISKWRSYISPAVKNSDKPETLDVVVGSLICEKHSRLIERPSELVFRRGTIIQKESSAGELTFISENDWKCFCEEWGATETKGISVKIENINDSMNAIPGSCKETAICEDQLASWDKVNNESGNAQILIKTCPEVCESCIGEKESCELMHKLNYCNEDIFIVLVRGKEVPRSILEASKVVETDRRVSKRSRKTKSGSSISLKVSASTSIYQLKMMIWESFGVVKENQILQKGDTTIDNNDENATLVDVNIFAGDQIIVRDSEIHENRDIADELCTEKKDTQNTEEGFRGTLLSSNLSSFV* 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0727 1082 Gene3D - 972 1043 - -
Psa6g0727 1082 CDD Peptidase_C19L 109 448 IPR033841 GO:0004843
Psa6g0727 1082 SUPERFAMILY Ubiquitin-like 974 1043 IPR029071 -
Psa6g0727 1082 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 345 363 IPR018200 GO:0004843|GO:0006511
Psa6g0727 1082 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 2 1052 - -
Psa6g0727 1082 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 108 451 IPR028889 -
Psa6g0727 1082 Gene3D - 745 870 IPR035927 -
Psa6g0727 1082 ProSiteProfiles DUSP domain profile. 515 607 IPR006615 GO:0004843
Psa6g0727 1082 ProSiteProfiles DUSP domain profile. 750 870 IPR006615 GO:0004843
Psa6g0727 1082 Gene3D Cysteine proteinases 95 451 - -
Psa6g0727 1082 Pfam Ubiquitin carboxyl-terminal hydrolase 109 448 IPR001394 GO:0004843|GO:0016579
Psa6g0727 1082 CDD Ubl_USP48 973 1076 IPR044743 GO:0004197|GO:0004843|GO:0016579
Psa6g0727 1082 ProSiteProfiles DUSP domain profile. 622 724 IPR006615 GO:0004843
Psa6g0727 1082 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 109 124 IPR018200 GO:0004843|GO:0006511
Psa6g0727 1082 Gene3D - 507 604 IPR035927 -
Psa6g0727 1082 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2 1052 - -
Psa6g0727 1082 SUPERFAMILY DUSP-like 530 604 IPR035927 -
Psa6g0727 1082 SUPERFAMILY Cysteine proteinases 107 452 IPR038765 -
Psa6g0727 1082 SMART dusp 533 604 IPR006615 GO:0004843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0727 Psa-Chr6 25442116 25454535 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0727 87 386 Miscellaneous Gene Families AT4G31670 30.312 2.09e-27 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0727 - K11858 gmx:100795556 1705.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g0727 6 25442116 25454535 Psa6g0727 6 25442116 25454535 ECH