LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa6g0726	ATGACAACGGTTTCAAAGATATCGTCACTGTTATCATTATCCAAGCCTAAACTCATTCACCACACCAATTCCTTTCTTCTCTCTGCTTCAAATCTCAGAACCCTAAGTAGCAGCAGCAACATCGCTACGAGAGTCACAAAGAAGAAGACACAAGCAGCACTTGCCAAGGAAAAGAGACGAACTCGTTCCGATAAAGAACTCGACAAGGACACAATCATTGAGCTTTATAACAACAATTCTCATCTTCATATTCCCGTTATGCTTTCCGAAGTCTTGGATGTCTTCTCAAATTGCTCCTTAACCTCTTTCGTTGATTGCACTCTTGGCGCCGCTGGCCACTCCACCAATGTGATTAAAGGACATCCAGAATTGAAGTATTTTGTTGGGATTGATGTGGATCCTGTGGCAAGTGACGTAGCTCAATCGCGGATCAGTTCAGTTTTGGACGATAGCGGGTCTAGTGTGAAAGTGTTTACCATGTTAAGGAATTTTAGGCGCATTAAGTCTGTGCTTAGAGGAACAGGCGAGGAACACTTGGGGGTTGCGTCTATTGATGGCATCTTGATGGACCTCGGAATGTCATCGATGCAGGTGGATGATCCTCAAAGAGGATTCAGTGTGCTTTGTGATGGACCCCTTGATATGCGTATGGATCCTCAGGCAAGCCTTAAAGCAGAAGACATACTAAACTCGTGGCCAGATACTGAAGTGGGCCGTATCCTAAGGGATTATGGGGAAGAAAGTAATTGGCGCACTCTGCAGAAGAAAATTGTTCAAGCCCGTTTAGAAGGTGGATTACATTCCACTACCGACTTGCTGGATCTTATTAAGCGCGTGACTCCTGCAATGAAAGGTGGAAGGCAAGGTTGGATAAAGACAGCAACCCGAGTATTTCAAGCATTGAGAATCGCGGTCAATGATGAACTGAAGACTCTTGAGGATTCCCTCTATTCTTGTTTTGACTGCCTTGCACCTGGAGGCAGGCTCGCCGTCATATCCTTTCACAGTTTGGAGGACAGAATTGTGAAGCAAACATTTCTTAATATAATTAAAGGGAATGAAGACATGGGCGAAGGGGAAAGCGGCAATAGTGATCTGAGGAAGATGATTGATGGAATCAAAGAAAAAGAAGCGTGGGTAAAACAAGTAATGCATGGATCAAATGGTATAGTTCTCACAAAAAGACCAATCACACCATCAGAAGAAGAAGAGGAATTGAACCGCCGAAGTCGAAGTGCAAAGCTCAGGGTTATTCAGAAGCTTTGA	1266	0.4415	MTTVSKISSLLSLSKPKLIHHTNSFLLSASNLRTLSSSSNIATRVTKKKTQAALAKEKRRTRSDKELDKDTIIELYNNNSHLHIPVMLSEVLDVFSNCSLTSFVDCTLGAAGHSTNVIKGHPELKYFVGIDVDPVASDVAQSRISSVLDDSGSSVKVFTMLRNFRRIKSVLRGTGEEHLGVASIDGILMDLGMSSMQVDDPQRGFSVLCDGPLDMRMDPQASLKAEDILNSWPDTEVGRILRDYGEESNWRTLQKKIVQARLEGGLHSTTDLLDLIKRVTPAMKGGRQGWIKTATRVFQALRIAVNDELKTLEDSLYSCFDCLAPGGRLAVISFHSLEDRIVKQTFLNIIKGNEDMGEGESGNSDLRKMIDGIKEKEAWVKQVMHGSNGIVLTKRPITPSEEEEELNRRSRSAKLRVIQKL*	422

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa6g0726	421	Gene3D	Vaccinia Virus protein VP39	83	418	IPR029063	-
	Psa6g0726	421	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	83	421	IPR029063	-
	Psa6g0726	421	Hamap	Ribosomal RNA small subunit methyltransferase H [rsmH].	83	421	IPR002903	GO:0008168
	Psa6g0726	421	Gene3D	Putative methyltransferase TM0872, insert domain	201	308	IPR023397	GO:0008168
	Psa6g0726	421	PANTHER	S-ADENOSYL-METHYLTRANSFERASE MRAW	59	421	IPR002903	GO:0008168
	Psa6g0726	421	SUPERFAMILY	Putative methyltransferase TM0872, insert domain	203	306	IPR023397	GO:0008168
	Psa6g0726	421	Pfam	MraW methylase family	82	420	IPR002903	GO:0008168
	Psa6g0726	421	TIGRFAM	TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase	79	420	IPR002903	GO:0008168

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa6g0726	K03438		-	gmx:100787277	565.844

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Psa6g0726	6	25325060	25327555	Psa6g0726	6	25325060	25327555	ECH