Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Psa6g0706 | ATGCATTCTCTGAACTTTCATCGTACACTGTTCTCCCTTCGTTTCTTCCTATCATCGACCCTCAAACCATTCTCCTCCTCTTCCTCTTCTTCTTCTTCTTCATGGCTATCCCAACCCGGAAACCCACTCATTCACTGGCCATCATTCCCACCAAACCAACCCAAACCCGCTCCAAACCCAAACCCGGTTCCAAAACCCGACACTCCTCCACCCAACCCCACTTTTTCCACCAACGATTTCTCTCTCATTTCCAACCTCTTCACCAACCCATCCATCTCTCCCGGTTCACAACTCCACGCCCAATTAAACCAAACCGGAATCAAACCGGATTCCCCTCTCATTCACGCCGTCTTCCAACACTTCGCCTCCTCGCCCAAATTACTACACTCGCTTTTCCTATGGGCTGAGAATCAACCCGGGTTCAGACCCGATTCGAGTCTGTTTGACTCAGCGGTTAACGCTCTTGCGAAAATGAGGGAGTTTGACTCCGCTTGGACTCTTGTTCTTGATCGCATTGATAGAGACGACGTAGAAGATGAGAAATTGGTCTCGGTTGGTACATTTGCTATCATGATTCGACGCTATGCTCGTGCAGGTATGCACAAGGCTGCTATTAGGACGTTTGAGTTTGCTAAAGATAAGAAGTCAATTGTGGATTCAGGATCAGAAATGAGTTTATTTGGGATATTGGTTGATTCACTTTGCAAAGAAGGGTCTGTTAGGGAAGCTTCAGAGTATTTCTTTAGGAGGAAGGAGACAGATCTGGGTTGGGTTCCTTCAATTCGGATTTATAACATATTGTTAAATGGATGGTTTCGAGCGAGGAAACTCAAACATGCTGAGAGACTTTGGGAAGAGATGAAGAAGGAGAATGTGAGACCGAGTGTTGTGACATACGGTACTCTTGTGGAAGGATATTGTCGGATGCGCCGTGTTGAAAAGGCACTTGAGATGATTGGCGAAATGACCAAAGAGGGAATTGAACCAAATGCAATTGTATATAACCCTATAATCGATGCATTGGCAGAAGATGGGAGATTTAAAGAGGCTTTGGGTATGATTGAGCGTTTTCATATTTTGAAAATAGGTCCTACTCTTTCAACTTACAATTCTCTGGTGAAGGGTTTTTGTAAGGCAGGAGATCTTGAAGGTGCTAGTAAGATTCTAAAAAAGATGATAAGTAGAGGTTTCCTTCCAATCCCCACTACCTATAATTACTTTTTTAGGTACTTTTCAAGATGCGGAAAAGTTGATGAAGGGATGAACCTGTATACCAAGATGATTGAATCTGGACATAACCCAGATCGTCTAACTTACCATCTTGTGTTGAAGATGTTATGCGAAGAGGAGAAGTTAGAGTTGGCAGTTCAAGTTAGCAAGGAAATGAAGCATAAAGGACATGACATGGACTTGGCTACGAGTACCATGTTAACTCATTTGCTATGCAAAATGCATAAGTTGGAAGAGGCTTTTGCAGAATTTGAGAGCATGATAAGAAGAGGTATAGTTCCTCAATATCTTACATTTCAAAAATTGAATGTTGAGCTAAAGAAACAAGGTATGACTGAAATGGCTCGAAAACTTTGCCAGTTGATGTCGTCTGTTCCACATTCTTCCAACTTGCCAAATACATATGGTGAAGTCAGAGATAATGCACATGCACGTAGGAAATCTATAATTCAGAAAGCCAAAGCAGTTTCTGATTTGCTGAAGGACCCCAAAGAACTTGATAAGCTTAGAAGTTCATCGGGAGATGCTGTCTCAAGTGCAAACTGTTTGATAGAGGATATTGAGAAAAAGACAGATGTAAGATGA | 1815 | 0.4242 | MHSLNFHRTLFSLRFFLSSTLKPFSSSSSSSSSSWLSQPGNPLIHWPSFPPNQPKPAPNPNPVPKPDTPPPNPTFSTNDFSLISNLFTNPSISPGSQLHAQLNQTGIKPDSPLIHAVFQHFASSPKLLHSLFLWAENQPGFRPDSSLFDSAVNALAKMREFDSAWTLVLDRIDRDDVEDEKLVSVGTFAIMIRRYARAGMHKAAIRTFEFAKDKKSIVDSGSEMSLFGILVDSLCKEGSVREASEYFFRRKETDLGWVPSIRIYNILLNGWFRARKLKHAERLWEEMKKENVRPSVVTYGTLVEGYCRMRRVEKALEMIGEMTKEGIEPNAIVYNPIIDALAEDGRFKEALGMIERFHILKIGPTLSTYNSLVKGFCKAGDLEGASKILKKMISRGFLPIPTTYNYFFRYFSRCGKVDEGMNLYTKMIESGHNPDRLTYHLVLKMLCEEEKLELAVQVSKEMKHKGHDMDLATSTMLTHLLCKMHKLEEAFAEFESMIRRGIVPQYLTFQKLNVELKKQGMTEMARKLCQLMSSVPHSSNLPNTYGEVRDNAHARRKSIIQKAKAVSDLLKDPKELDKLRSSSGDAVSSANCLIEDIEKKTDVR* | 605 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Psa6g0706 | 604 | TIGRFAM | PPR: pentatricopeptide repeat domain | 263 | 295 | IPR002885 | - | |
| Psa6g0706 | 604 | TIGRFAM | PPR: pentatricopeptide repeat domain | 297 | 331 | IPR002885 | - | |
| Psa6g0706 | 604 | TIGRFAM | PPR: pentatricopeptide repeat domain | 368 | 399 | IPR002885 | - | |
| Psa6g0706 | 604 | TIGRFAM | PPR: pentatricopeptide repeat domain | 332 | 364 | IPR002885 | - | |
| Psa6g0706 | 604 | TIGRFAM | PPR: pentatricopeptide repeat domain | 403 | 435 | IPR002885 | - | |
| Psa6g0706 | 604 | Gene3D | Tetratricopeptide repeat domain | 323 | 394 | IPR011990 | GO:0005515 | |
| Psa6g0706 | 604 | Gene3D | Tetratricopeptide repeat domain | 250 | 322 | IPR011990 | GO:0005515 | |
| Psa6g0706 | 604 | Gene3D | Tetratricopeptide repeat domain | 110 | 249 | IPR011990 | GO:0005515 | |
| Psa6g0706 | 604 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 330 | 364 | IPR002885 | - | |
| Psa6g0706 | 604 | Pfam | PPR repeat | 227 | 248 | IPR002885 | - | |
| Psa6g0706 | 604 | Pfam | PPR repeat | 333 | 356 | IPR002885 | - | |
| Psa6g0706 | 604 | Pfam | PPR repeat | 187 | 209 | IPR002885 | - | |
| Psa6g0706 | 604 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 400 | 434 | IPR002885 | - | |
| Psa6g0706 | 604 | Pfam | PPR repeat | 364 | 392 | IPR002885 | - | |
| Psa6g0706 | 604 | Gene3D | Tetratricopeptide repeat domain | 395 | 575 | IPR011990 | GO:0005515 | |
| Psa6g0706 | 604 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 470 | 504 | IPR002885 | - | |
| Psa6g0706 | 604 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 435 | 469 | IPR002885 | - | |
| Psa6g0706 | 604 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 260 | 294 | IPR002885 | - | |
| Psa6g0706 | 604 | Pfam | PPR repeat family | 259 | 308 | IPR002885 | - | |
| Psa6g0706 | 604 | Pfam | PPR repeat family | 403 | 447 | IPR002885 | - | |
| Psa6g0706 | 604 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 365 | 399 | IPR002885 | - | |
| Psa6g0706 | 604 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 295 | 329 | IPR002885 | - | |
| Psa6g0706 | 604 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 91 | 600 | - | - | |
| Psa6g0706 | 604 | SUPERFAMILY | HCP-like | 261 | 456 | - | - | |
| Psa6g0706 | 604 | PANTHER | LEAF PROTEIN-LIKE | 91 | 600 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Psa6g0706 | 84 | 532 | Miscellaneous Gene Families | AT4G11690 | 24.667 | 1.69e-44 | 164 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Psa6g0706 | - | - | gmx:100793484 | 818.535 |