Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0678 ATGATAAAATCCAAGTTATTATCAACAACCATAACCCTCCAACTTCCCCCAAACACTCCAAAAACAAGACTTGCAGAACAAACCTGCTTAACACTTCTTCAATCCTACTGCAACACATTCCCAAAACTAACTCAAATCCACGCCTTCATTCTCAAAAACGGCCTCCAAAACAACCCATTAGTTCTCACCAAATTCGCTTCTTCTTCCTCCAACATCAACGCCATTCACTACGCTTCCTCATTTTTATTCCCATCTCACCAAACTACCCCACCTTCCTCCTACGATGCATTCCTCTTCAACACCGTTATCAGAGCCTATGCTCAAACGCAAACCCATGATTCCAAATCGAAGGCATTGGAATTCTACAGAACCATGCTCCGGTACGGTGTTTCGCCGAATAAATTCACGTTTCCGTTTGTTCTTAAAGCTTGTGCTGGTGTTGCGAGTTTGAGATTGGGGAAGCTGGTTCATGGGTCTGTGGTGAAGTTTGGGTTTGAAGATGATCTTCATGTTGTGAATACAATGATTCATATGTATTGTTGTTGTGAGGGAGAAGAAGGGGTTGAGTTTGCTGAGAAGGTGTTTGATGAAAGTTCTAAGTCGGATTTGGTGACGTGGAGTGCTATGATTGGTGGCTTTGTGCGTTTGGGGCGCTCTGCACGTGCTGTTGGATTGTTTAGGGAGATGCAGGTCATGGGTGTTTTCCCTGATGAGATCACAATGGTTTCTGTTTTGTCTGCATGTGCTGATTTGGGAGCACTTGAGCTTGGAAAATGGCTGGAATCATACATTGAGAGGAAAAACATTCCAAAGTCTGTGGAACTTTGTAACGCACTGATAGACATGTTTGCAAAGTGTGGCGATGTCGATAAAGCCACCAAACTGTTCGGACAAATGGAGTCACGCACCATAGTTTCATGGACTTCAGTAATCGCTGGTTTTGCGATGCACGGTCGTGGTTTAGACGCTGTTTCTTTATTTGACGAAATGGTTGAAAATGGAATAACACCTGACGACGTTGCTTTCATTGGTGTGCTCTCTGCTTGCAGTCACTCAGGGCTTGTTGACAAAGGAAGAACTTATTTCAAATCAATGGAAAGGAATTTCAACATTGTGCCAAAGATAGAACACTATGGATGCATGGTGGATTTGTTTTGTAGAGGGGGATTTGTTAAAGAAGCATTTGAGTTTGTTCAAAAGATGCCCTTTGAACCAAACCAAATCATATGGAGAACCGTAATCACTGCTTGTCATGCAACTGGAGAGCTCAAGCTTGGAGAGAGTATCTCCAAAGAGCTAATAAAAAACGAGCCGATGCACGAGTCCAATTACGTTTTACTGTCGAACATTTACGCAAAATTGCGACAATGGGAAAAGAAGACTAAGGTGAGGGAAATAATGGATATGAGAGGGATGAAGAAGGTTCCAGGGAGTACCATGATTGAGGTAAACAATGAAATGCATGAGTTTGTTGCTGGTGATAAGTCTCATGATCAGTATAAGGAGATATATGAAATGGTGGATGAGATGGGAAGGGAAATCAAAAGGGCAGGGTATGTTCCTACAACATCTCAAGTGTTGCTTGACATCGATGATGAAGATAAAGAAGATGCTTTGTATAGACATAGTGAGAAGCTTGCCATAGCTTTTGCTCTTTTGAATACTCCCCCTGGAACATCCATTAGGCTTGTGAAGAACTTGCGCGTTTGTGAAGATTGTCACTCTGCTACTAAGTTTATATCTCAGGTTTATAATCGAGAGATTGTTGTCCGGGACCGCAATCGATTCCACCATTTCAAGAATGGTCTGTGCTCTTGTAGAGACTTTTGGTAA 1833 0.4239 MIKSKLLSTTITLQLPPNTPKTRLAEQTCLTLLQSYCNTFPKLTQIHAFILKNGLQNNPLVLTKFASSSSNINAIHYASSFLFPSHQTTPPSSYDAFLFNTVIRAYAQTQTHDSKSKALEFYRTMLRYGVSPNKFTFPFVLKACAGVASLRLGKLVHGSVVKFGFEDDLHVVNTMIHMYCCCEGEEGVEFAEKVFDESSKSDLVTWSAMIGGFVRLGRSARAVGLFREMQVMGVFPDEITMVSVLSACADLGALELGKWLESYIERKNIPKSVELCNALIDMFAKCGDVDKATKLFGQMESRTIVSWTSVIAGFAMHGRGLDAVSLFDEMVENGITPDDVAFIGVLSACSHSGLVDKGRTYFKSMERNFNIVPKIEHYGCMVDLFCRGGFVKEAFEFVQKMPFEPNQIIWRTVITACHATGELKLGESISKELIKNEPMHESNYVLLSNIYAKLRQWEKKTKVREIMDMRGMKKVPGSTMIEVNNEMHEFVAGDKSHDQYKEIYEMVDEMGREIKRAGYVPTTSQVLLDIDDEDKEDALYRHSEKLAIAFALLNTPPGTSIRLVKNLRVCEDCHSATKFISQVYNREIVVRDRNRFHHFKNGLCSCRDFW* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0678 610 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 302 IPR002885 -
Psa6g0678 610 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 28 596 - -
Psa6g0678 610 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 202 236 IPR002885 -
Psa6g0678 610 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 95 132 IPR002885 -
Psa6g0678 610 TIGRFAM PPR: pentatricopeptide repeat domain 204 238 IPR002885 -
Psa6g0678 610 TIGRFAM PPR: pentatricopeptide repeat domain 275 302 IPR002885 -
Psa6g0678 610 TIGRFAM PPR: pentatricopeptide repeat domain 305 338 IPR002885 -
Psa6g0678 610 PANTHER - 28 596 - -
Psa6g0678 610 Pfam PPR repeat 276 302 IPR002885 -
Psa6g0678 610 Pfam PPR repeat 377 401 IPR002885 -
Psa6g0678 610 Pfam E+ motif 488 514 IPR046849 -
Psa6g0678 610 Pfam E motif 422 482 IPR046848 -
Psa6g0678 610 Gene3D Tetratricopeptide repeat domain 150 253 IPR011990 GO:0005515
Psa6g0678 610 Gene3D Tetratricopeptide repeat domain 254 349 IPR011990 GO:0005515
Psa6g0678 610 Gene3D Tetratricopeptide repeat domain 350 441 IPR011990 GO:0005515
Psa6g0678 610 Gene3D Tetratricopeptide repeat domain 90 149 IPR011990 GO:0005515
Psa6g0678 610 Pfam DYW family of nucleic acid deaminases 518 610 IPR032867 GO:0008270
Psa6g0678 610 Pfam PPR repeat family 202 249 IPR002885 -
Psa6g0678 610 Pfam PPR repeat family 303 350 IPR002885 -
Psa6g0678 610 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 337 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0678 Psa-Chr6 23009294 23012506 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0678 116 610 Glycoside Hydrolase AT3G49170 39.800 9.32e-133 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0678 - - lang:109350726 968.763