Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0657 ATGGTTTCTTCCGTACTCTCTGTAGCTTCACACTCTGCTTCACTTCCATTGCTTGAAACCACCATCAAGGGAAAGAGCAAGTTTGGAATCAACGGTCTGAGATTTAGCAAGTTAATTCAGTCTTCTGGTCGGATCTCTATGGTTGCTACGGTTAATGTTTCTCGGTTTGAGGGTATTCCGATGGCTCCTGCTGATCCGATTCTTGGAGTTTCTGAAGCATTTAGAGCGGATACGAGTGATGCTAAGCTCAATCTTGGAGTTGGCGCGTATAGAACTGAAGAACTACAGCCATATGTGCTTAATGTTGTAAAAAAGGCAGAGAATCTTATGCTGGAGAGAGGGGAAAACAAAGAGTATCTCCCTATTGAAGGTTTGGCTGCATTTAACAAGGCAACTGCAGAATTGTTACTCGGAGCAGACAATCCAGCAATCAAACAACAAAGAGTTGCTACTGTCCAAGGTCTTTCCGGAACTGGTTCTCTGCGACTTGGTGCAGCTTTCATAGAACGATATTTCCCCGAGGCAAAAGTTTTGATATCAAATCCTACGTGGGGTAATCACAAGAATATTTTCAATGACGCCAGAGTACCATGGTCTGAGTACCGATACTATGATCCCAAGACAGTTGGATTGGATTTTGAGGGCATGCTAGAAGATATCAAGTCAGCTCCCGAAGGAACTTTTGTGTTACTTCATGGATGCGCTCATAACCCTACTGGTATTGATCCAACACCAGAACAGTGGGAGAAAATAGCTGATGTAATTCAACAAAAGAAGCACTTTCCATTTTTCGATGTTGCTTACCAGGGGTTTGCTAGTGGAAGCCTTGATGAAGATGCAGCATCTGTGAGATTGTTTGTGTCACGTGGCATGGAGGTTTTTGTAGCTCAGTCATACAGTAAAAATCTCGGTCTTTATGCTGAAAGGGTTGGGGCTATCAACGTCATTTCCTCTTCACCAGAATCTGCAGTAAGGGTGAAGAGCCAATTGAAAAGGCTTGCTCGACCAATGTACTCTAATCCACCTGTTCACGGGGCTAGAATTGTTGCTAATATTGTTGGGGATCCAACCCTCTTCGGTGAATGGAAGGCAGAAATGGAAATGATGGCTGGAAGGATAAAAACTGTTAGACAGGCGCTATATGATAGTATTTCTTCAAAAGACAAAAGTGGAAAGGATTGGTCGTTCATACTTAAGCAAATCGGCATGTTCTCATTCACAGGCTTGAACAAGAATCAGAGTGACAATATGACAAATAAGTGGCATATATACATGACAAAGGATGGAAGGATTTCCCTCGCAGGATTATCGCTGGCCAAAAGTGAATACCTTGCAGATGCTATTATCGATTCTTATCATAATGTCAGCTGA 1371 0.4274 MVSSVLSVASHSASLPLLETTIKGKSKFGINGLRFSKLIQSSGRISMVATVNVSRFEGIPMAPADPILGVSEAFRADTSDAKLNLGVGAYRTEELQPYVLNVVKKAENLMLERGENKEYLPIEGLAAFNKATAELLLGADNPAIKQQRVATVQGLSGTGSLRLGAAFIERYFPEAKVLISNPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMLEDIKSAPEGTFVLLHGCAHNPTGIDPTPEQWEKIADVIQQKKHFPFFDVAYQGFASGSLDEDAASVRLFVSRGMEVFVAQSYSKNLGLYAERVGAINVISSSPESAVRVKSQLKRLARPMYSNPPVHGARIVANIVGDPTLFGEWKAEMEMMAGRIKTVRQALYDSISSKDKSGKDWSFILKQIGMFSFTGLNKNQSDNMTNKWHIYMTKDGRISLAGLSLAKSEYLADAIIDSYHNVS* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0657 456 PRINTS Aspartate aminotransferase signature 229 248 IPR000796 GO:0006520|GO:0008483
Psa6g0657 456 PRINTS Aspartate aminotransferase signature 260 272 IPR000796 GO:0006520|GO:0008483
Psa6g0657 456 PRINTS Aspartate aminotransferase signature 328 353 IPR000796 GO:0006520|GO:0008483
Psa6g0657 456 PRINTS Aspartate aminotransferase signature 397 415 IPR000796 GO:0006520|GO:0008483
Psa6g0657 456 PANTHER ASPARTATE AMINOTRANSFERASE, CYTOPLASMIC 34 454 - -
Psa6g0657 456 CDD AAT_like 83 436 - -
Psa6g0657 456 Gene3D - 114 355 IPR015421 GO:0003824
Psa6g0657 456 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 298 311 IPR004838 GO:0003824|GO:0009058|GO:0030170
Psa6g0657 456 Pfam Aminotransferase class I and II 82 448 IPR004839 GO:0009058|GO:0030170
Psa6g0657 456 Gene3D Aspartate Aminotransferase, domain 1 59 448 IPR015422 GO:0003824
Psa6g0657 456 SUPERFAMILY PLP-dependent transferases 54 450 IPR015424 -
Psa6g0657 456 PANTHER ASPARTATE AMINOTRANSFERASE 34 454 IPR000796 GO:0006520|GO:0008483
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0657 Psa-Chr6 22283423 22286340 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0657 K00811 - gmx:547792 780.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g0657 6 22283423 22286340 Psa6g0657 6 22283423 22286340 ECH