Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0642 ATGTCTTTCATTTCCACTCTCAGAAGATCCATCTCACCCTTCATCCCACACTTTTCAATCCAACGCTTCCAAATCCTCCACCCAACCTCATCTTCCCCATCGCTTTTCAACGCTCGGAACGCTGTTTTCGCCGTCATTCTCGCCGGCACCAGTTTAGGGTTTCTTCTCTACACCACCGACTTTAATTCAACTCTCTTTCAACCTTCACTCTCTTCCTTTGTTGACTTGTCAACACCGAATTCCGAAGACCAAAACCGATCTCGTTTTTCACCTTCTTCATTCCTTACGAAATTCTCCCTTCCTGAAACTTCTGGTACCTTCATTTTTGGAGAGGCGTACAGGAGAAAGGTTTTTTTCAACTATGAGAAGCGCATGCGGTTGCGAAGTCCTCCGGAAAAGGTTTTTGAATACTTTGCATCTTATCGATCACCACAAAGAGAAGTACTCATGACGCCAGCAGACCTAATGAGGGCTGTAGTTCCTGTTTTCCCTCCATCTGAATCTCACCTTGTTAGAGATGGATACTTGATAGGAGAAAGAAGCCCTGGCCATTTATGCTGCTCTCCTTCAGATTTTTTTATGCTTTTCGATGTAAACAATGACGGACTTATATCATTTAAAGAGTATATCTTTTTTGTAACGCTACTCAGCATCCCAGAATCAAGCTTTTCCGTGGCATTTAAAATGTTTGATGTGAACAACAATGGAGAGATAACCAAGGAAGAATTCAAGAAAGTGATGGCATTGATGCGAACTCATCATCGACAAGGTGTTCACCACAGGGATGGACTGCGAACTGGTCTGAAGGTGAACGATTCTGTGGAAAATGGAGGGCTGTTGGAATACTTTTTTGGTGAAGACGGAAAGGGTTGCCTCAAACTTGATAAATTTGTGCAATTTTTACGAGACTTGCATGATGAAATGCTGAAGCTGGAGTTTGCTCACTATGACTACAAATCTCGAAAAACAATTTCAGCCAAGGACTTTGCACTCTCCATGGTTGCTTCCGCCGACATGAGTCATCTAGGCAAATTATATGGCCAAGATGGCAAGTTCATATTTTGTTTGTTTCAATTTCAGAGATCTATGGGGAAACCGGCTGGGAAAAGGAAGGATCATGAATCACCAAAAGCAAACAACAATCACAATAACAAGAAGGGTTACGAGCGTTCATCATCCTCAAAAGCATTAGATGATGACACAGCTATGTTCATCAACATGTCACAAGAGCTGAGAGAAGAAGGTAACAAACTTTTTTACCAGAAAAAAGACAATGAAGGTGCTATGTTAAAGTACGAAAAAGCCCTCAAACTCCTTCCCAAAAATCACATAGATGTTGCTCATCTTCATACAAATATGGCTATGTGTTATATGCAAATGGGTCTTGGTGAGTATCCTCGAGCAATCAATGAGTGCAACCTTGCTTTGCAGGTTTCTCCTCGGTATAGCAAAGCTCTTTTGAGGAGAGCTAAGTGTTATGAAGCTTTGAATCGGTTGGATTTGGCTATGAGAGATGTTAGGGTTGTTTTGAATGCTGAGCCGAATAATCTTTCGGCATTGGAGGTTCTTGATAGCTTGAGAAATACTATGGATGAGAAAGGAATTACTGTTGATGAGACCGAGATTGCCTTGGCTGCTATACAGCAGCAAGAGTCTCCCGCTGCTCGGTTTAGGAAAGTTGTTAATGAGAAGATTAAGAAAAAAAAGGGACACAAAGGGGAAGGTGAGGAAGAGCGTAAAAGTAAGGATGTTGTTGAGAAGAAAGCCAATGTTGTGAATGTTAAGGTGAAGGGTAAAGATCCTAAGGATAAGGCTATGAAGGATAAGGATAGTAGGGAAACTGTTAAGAAAGATAAAGGGGTTACTAGGACTGTGAAGTTGATATATGGAGAGGATATAAGGTGGGCGCAATTGCCTATGAATTGTAGTATGAAGTTGGTGAGGGATGTGATAAGGGATAGATTTCCGGGGTTAAAGGGTGTTCTTGTTAAGTATAAGGATAGGGAAGGTGATTTGGTTACTATTACTACTACTGCTGAATTAAGGTTAGCTGAGGATTGTCATGTGCTTGGCTCGATTCGGCTATATATTACGCAGGTGGATTTTGATCAGGAGCCACGTTACGATGAAAAGACGAGTAGTGGTGAGGTAAGAGTGGGGAATGGGGTTGGAGAAGGTGACAGGGGTGTCAGGGCTAATAGGATGATTACTGTGGAGGATTGGCTTGTTCAGTTTGCGAGGCTGTTTAAGAACCATGTTGGGTTTGATTCGGATTCGTATTTGGATATTCATGAGGTTGGGATGAAGCTGTATTCAGAGGCGATGGAGGATGCAGTGACCAATGATAGTGCTCAAGAGTTGTTTGATATTGCTGCGGATAAGTTTCAAGAGATGGCTGCTTTGGCTTTGTTTAATTGGGGGAATGTTCACTTGTCTAAAGCGAGGAGGCAGGTGCCTTTTCAGGAGGATGGGATGAGAGAAGCGTCTTTTGAGCATGTTAAAGCTGCATATGAGTGGGCTAAGAAGGAATACAAGGAAGCGGAAATGAGATACGAAGAATCTGTGAAAATCAAACCGGACTTTTACGATGGACTACTTGCTCTTGGGTATCAGCAGTTTGAGCAAGCAAAGCTATGCTGGTGTTATTTAATTGCAATTGATAAGAAATTTGAAGTTGACCCTTTTGAGGAGGTTCTACAGCTCTACAACAAGGCAGAGGACAGTATGGAGAAAGGGATGTTGATGTGGGAGGAGATTGAGGAACAGCGTTTGAATGGACTATCTAAATTAGATAAGTATAATGCACAGTTAGAGAAAATGGGGTTGCTTGGTCTTTTCAGGGATGTTTCTTCTAATGAAGCCGACGAGCACGCATCAAAGATGAGGATACAGATATATCTTTTATGGGGCACCTTATTGTACGAGCGTTCTGTTGTGGAATTTAAGCTCGAACTACCAACATGGGAGGAATGTTTGGAGGTTGCAGTTGAAAAGTTTGAACTAGCTGGAGCTTCTACAACTAACATTGGTGTCATGATAAAGAACCATTGTTCTAATGAGACAGCGATGGAAGGGTTTAAAATTGACGACATCGTGCAAGCATGGAATGAGATGTATGATGGGTGGCAATTTGACTTTCCAACTTTCCGACTTGAACCATTGTTTCGTCGGCGTGTTCCAAGACTCCAATACATCCTGGAGCAATTTTAA 3210 0.4206 MSFISTLRRSISPFIPHFSIQRFQILHPTSSSPSLFNARNAVFAVILAGTSLGFLLYTTDFNSTLFQPSLSSFVDLSTPNSEDQNRSRFSPSSFLTKFSLPETSGTFIFGEAYRRKVFFNYEKRMRLRSPPEKVFEYFASYRSPQREVLMTPADLMRAVVPVFPPSESHLVRDGYLIGERSPGHLCCSPSDFFMLFDVNNDGLISFKEYIFFVTLLSIPESSFSVAFKMFDVNNNGEITKEEFKKVMALMRTHHRQGVHHRDGLRTGLKVNDSVENGGLLEYFFGEDGKGCLKLDKFVQFLRDLHDEMLKLEFAHYDYKSRKTISAKDFALSMVASADMSHLGKLYGQDGKFIFCLFQFQRSMGKPAGKRKDHESPKANNNHNNKKGYERSSSSKALDDDTAMFINMSQELREEGNKLFYQKKDNEGAMLKYEKALKLLPKNHIDVAHLHTNMAMCYMQMGLGEYPRAINECNLALQVSPRYSKALLRRAKCYEALNRLDLAMRDVRVVLNAEPNNLSALEVLDSLRNTMDEKGITVDETEIALAAIQQQESPAARFRKVVNEKIKKKKGHKGEGEEERKSKDVVEKKANVVNVKVKGKDPKDKAMKDKDSRETVKKDKGVTRTVKLIYGEDIRWAQLPMNCSMKLVRDVIRDRFPGLKGVLVKYKDREGDLVTITTTAELRLAEDCHVLGSIRLYITQVDFDQEPRYDEKTSSGEVRVGNGVGEGDRGVRANRMITVEDWLVQFARLFKNHVGFDSDSYLDIHEVGMKLYSEAMEDAVTNDSAQELFDIAADKFQEMAALALFNWGNVHLSKARRQVPFQEDGMREASFEHVKAAYEWAKKEYKEAEMRYEESVKIKPDFYDGLLALGYQQFEQAKLCWCYLIAIDKKFEVDPFEEVLQLYNKAEDSMEKGMLMWEEIEEQRLNGLSKLDKYNAQLEKMGLLGLFRDVSSNEADEHASKMRIQIYLLWGTLLYERSVVEFKLELPTWEECLEVAVEKFELAGASTTNIGVMIKNHCSNETAMEGFKIDDIVQAWNEMYDGWQFDFPTFRLEPLFRRRVPRLQYILEQF* 1070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0642 1069 CDD EFh 193 248 IPR002048 GO:0005509
Psa6g0642 1069 Pfam PB1 domain 622 698 IPR000270 GO:0005515
Psa6g0642 1069 SUPERFAMILY TPR-like 407 524 IPR011990 GO:0005515
Psa6g0642 1069 ProSiteProfiles PB1 domain profile. 622 700 IPR000270 GO:0005515
Psa6g0642 1069 SMART efh_1 188 216 IPR002048 GO:0005509
Psa6g0642 1069 SMART efh_1 222 250 IPR002048 GO:0005509
Psa6g0642 1069 MobiDBLite consensus disorder prediction 596 617 - -
Psa6g0642 1069 MobiDBLite consensus disorder prediction 366 395 - -
Psa6g0642 1069 Gene3D - 617 699 - -
Psa6g0642 1069 ProSiteProfiles EF-hand calcium-binding domain profile. 218 253 IPR002048 GO:0005509
Psa6g0642 1069 MobiDBLite consensus disorder prediction 565 584 - -
Psa6g0642 1069 PANTHER PROTEIN CLMP1 363 1068 IPR044517 -
Psa6g0642 1069 SUPERFAMILY CAD & PB1 domains 621 708 - -
Psa6g0642 1069 SUPERFAMILY EF-hand 192 332 IPR011992 -
Psa6g0642 1069 PANTHER PROTEIN PHOX4 363 1068 - -
Psa6g0642 1069 Pfam EF hand 191 209 IPR002048 GO:0005509
Psa6g0642 1069 MobiDBLite consensus disorder prediction 567 584 - -
Psa6g0642 1069 Gene3D Tetratricopeptide repeat domain 406 534 IPR011990 GO:0005515
Psa6g0642 1069 SMART PB1_new 622 700 IPR000270 GO:0005515
Psa6g0642 1069 ProSitePatterns EF-hand calcium-binding domain. 231 243 IPR018247 -
Psa6g0642 1069 Pfam EF hand 226 249 IPR002048 GO:0005509
Psa6g0642 1069 CDD PB1 624 697 - -
Psa6g0642 1069 Gene3D - 188 335 - -
Psa6g0642 1069 SMART tpr_5 447 482 IPR019734 GO:0005515
Psa6g0642 1069 SMART tpr_5 828 861 IPR019734 GO:0005515
Psa6g0642 1069 SMART tpr_5 483 516 IPR019734 GO:0005515
Psa6g0642 1069 SMART tpr_5 408 442 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0642 Psa-Chr6 21744869 21752293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0642 46 345 EF-hand Containing Proteins AT4G32060 69.737 6.10e-139 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0642 - - vra:106765155 978.008
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g0642 6 21744869 21752293 Psa6g0642 6 21744869 21752293 ECH