Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0527 ATGAATCTTTGGTGTTGTCTATGCTTCAACCAAAAGGAAAAAGAAGAAGAAGAGGAAAGGTGTAATATCGTTGGACCTATGAACAACGACGAGGACAACTTCGGAAACGTTTTTGATGATGAAGAAGGTGAAGACATAAATTATGACGCCAGATTTATTGACTATGGGAGAGATGCGTTTGGTTTGTGGCACTCGGAAGGAGAAAGTAGCTCTGTAAACGCCGCTGTAGCTCCGGGGAGTCCTGTCGCTGATGAGAGCCGCGATTCGTCTCACAAGCGCGCTAAGTTCTACAATGAGTGTCACTTTGATGACCCAACATCGTCTAGTAAAGTGAAATATTCTATGGATTATGGAGATTTTGATGCTTCTCTCCGACCTAGTCATGTCAATTGTTATGGAGATTTTGCATTGGTGTGTACTGGTGAGGATGGTAACGGTGTGGAAGACAGGGAAGGGAATGATAGCGACAGTTCACAACTAGAAGAACAAGAGGTTGTCAGGATGGATCTTACGGATGACCTGTTGCATATGGTTTTCTCATTTCTGGATCAGACCAATCTCTGCAGAGCTGCCAGAGTTTGTAAGCAGTGGCGAGCTGCTAGTACTCATGAAGATTTCTGGAAGAATTTGAATTTTGAAAATCGGGACATATCTGAAGAACAATTTGAGGACATGTGTAGACGTTATCCAAATGCTACAGCATTGAGCATATCAGGACCTGCTATTTATTTGTTGGTCATGAAGGCTATCTCTTTGTTAAGGAATCTTGAGGTTCTGACATTAGGAAGAGGACAGATAGGGGATGCTTTTTTTCTTGCTCTACCCGATTGTTCTATGTTGAGAAAATTGAATATCAATGACTCTACACTTGGCAATAGTATTCAGGAGATATCTGTCGTTCATGAGAAATTGTGTCATCTTGAATTAACAAAATGTCGTGTCATGCGAATACAAGTCAGGTGCCCACAACTTAAAACTTTGTCGTTGAAGCGCAGTAACATGGCACAAGTTGTTCTTAATTGCCCTCTGTTGCATGAACTTGATATAGGCTCTTGCCACAAACTTCCTGATGCTGCTATTCGAGCTGCTGCAACTTCATGCCCTCAATTGGTGTCGCTGGACATGCGGAATTGTTCTTGTGTCAGCGATGAAACACTCCGTGAAATAGCACAGCACTGTCCTAATCTTGGTTTTCTTGATGCTTCATACTGCCCAAACATATCTTTGGAGTCTGTTCGACTCCCAATGTTGACAATTCTAAGGCTTCATAGCTGTGAGGGCATCACTTCTGCGTCAATGGCAGCAATAGCTCATAGTTCTATGTTGGAGGTTTTGGAACTTGACAATTGCAGTCTATTGACTTCAGTGTCATTGGATCTTCCGCGTTTGCAAAATATTAGATTGGTGTACTGTCGCAAATTAGCAGATTTGAACTTGAGGGCTATATCGCTTTCTTCTATACAAGTGTCTAACTGCTCTGTACTCCACAGGATCAATATCACTTCAAATTCACTTCAAAAATTAGCATTGCAAAAGCAGGATAGCTTAACTACATTAGCACTGCTATGCCAATCTTTACAAGAAGTGGACCTCTCTGAGTGTGAATCTTTGACAAATTCTATATGTGATGTTTTTAGTAATGGTGGAGGATGCCCGATGTTAAAATCACTAGTTCTTGATAATTGTGAGAGCTTGACTTCAGTTCGCTTCACCAGCACATCGTTAATCAGTCTTTCCCTTGGTGGTTGCCGAGCAATTACTACTCTTGAGCTAACCTGCCCTAATCTTGAGAAGGTCATTTTAGATGGTTGTGATCATTTGGAAAATGCATCATTTTGCCCTGTTGGTCTTCAATCTCTAAATTTAGGATATGCCCAAACATCCCTTAATTGTCCTCTCTTGACATCTCTTGATGCTTCCTTTTGCAGTCAACTCACTGATGATTGCTTGTCTGCTACCACCCGTGCATCTCTTCTTGACTTATCATACACTTTCTTGGTGAATCTGCAGCCTGGTTTTGACTCTTGTTCACAGCTAAAGGTATTAAAGTTGCAGGCATGCAAATTTCTCACTGACTCATCACTTGAACCTCTTTACAAGGGGGAAGCGCAAGAAGAAGGGCTTCTTTCTTGCTGCACTCACCTTACACGTGTGAGTTTGAATGGCTGTGTGAATATGCATGATTTAAACTGGGGGTACAGTCGAGGGAATTTTCCTGAGTTACCTGGCGAGGTTGATGTAGCTTGTCTCAACCTATGCTGGCTTAATTTAAGCCACTGTTCTTCATTGGAAGTTTTGAAGCTAGAGTGTCCAAGATTGACCAATCTATTCCTTCAGTCTTGCAACATTGACGAGGGAGCTGTTGAGGCTGCTATTTCAAAGTGCACTTTGTTGGAGACTCTTGACGTTCGCTTTTGTCCTAAGATAAGCTCAACGAGCATGGTAAGATTTCGTGCTGCATGTTCTGGTTTGAAACGTATATACAGCAGCCTTGCAACTTCATCAGCGTGA 2511 0.4205 MNLWCCLCFNQKEKEEEEERCNIVGPMNNDEDNFGNVFDDEEGEDINYDARFIDYGRDAFGLWHSEGESSSVNAAVAPGSPVADESRDSSHKRAKFYNECHFDDPTSSSKVKYSMDYGDFDASLRPSHVNCYGDFALVCTGEDGNGVEDREGNDSDSSQLEEQEVVRMDLTDDLLHMVFSFLDQTNLCRAARVCKQWRAASTHEDFWKNLNFENRDISEEQFEDMCRRYPNATALSISGPAIYLLVMKAISLLRNLEVLTLGRGQIGDAFFLALPDCSMLRKLNINDSTLGNSIQEISVVHEKLCHLELTKCRVMRIQVRCPQLKTLSLKRSNMAQVVLNCPLLHELDIGSCHKLPDAAIRAAATSCPQLVSLDMRNCSCVSDETLREIAQHCPNLGFLDASYCPNISLESVRLPMLTILRLHSCEGITSASMAAIAHSSMLEVLELDNCSLLTSVSLDLPRLQNIRLVYCRKLADLNLRAISLSSIQVSNCSVLHRINITSNSLQKLALQKQDSLTTLALLCQSLQEVDLSECESLTNSICDVFSNGGGCPMLKSLVLDNCESLTSVRFTSTSLISLSLGGCRAITTLELTCPNLEKVILDGCDHLENASFCPVGLQSLNLGYAQTSLNCPLLTSLDASFCSQLTDDCLSATTRASLLDLSYTFLVNLQPGFDSCSQLKVLKLQACKFLTDSSLEPLYKGEAQEEGLLSCCTHLTRVSLNGCVNMHDLNWGYSRGNFPELPGEVDVACLNLCWLNLSHCSSLEVLKLECPRLTNLFLQSCNIDEGAVEAAISKCTLLETLDVRFCPKISSTSMVRFRAACSGLKRIYSSLATSSA* 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0527 836 Pfam F-box-like 172 212 IPR001810 GO:0005515
Psa6g0527 836 Gene3D Ribonuclease Inhibitor 414 570 IPR032675 -
Psa6g0527 836 Gene3D Ribonuclease Inhibitor 571 670 IPR032675 -
Psa6g0527 836 Gene3D Ribonuclease Inhibitor 162 413 IPR032675 -
Psa6g0527 836 PANTHER OS10G0396666 PROTEIN 84 658 - -
Psa6g0527 836 PANTHER OS10G0396666 PROTEIN 656 736 - -
Psa6g0527 836 PANTHER OS10G0396666 PROTEIN 744 795 - -
Psa6g0527 836 SUPERFAMILY RNI-like 191 457 - -
Psa6g0527 836 PANTHER OS10G0396666 PROTEIN 744 795 IPR044703 GO:0010252|GO:1905393
Psa6g0527 836 PANTHER OS10G0396666 PROTEIN 656 736 IPR044703 GO:0010252|GO:1905393
Psa6g0527 836 PANTHER OS10G0396666 PROTEIN 84 658 IPR044703 GO:0010252|GO:1905393
Psa6g0527 836 Gene3D Ribonuclease Inhibitor 702 832 IPR032675 -
Psa6g0527 836 SMART fbox_2 170 210 IPR001810 GO:0005515
Psa6g0527 836 SUPERFAMILY L domain-like 413 566 - -
Psa6g0527 836 SMART LRR_CC_2 795 820 IPR006553 -
Psa6g0527 836 SMART LRR_CC_2 631 664 IPR006553 -
Psa6g0527 836 SMART LRR_CC_2 593 623 IPR006553 -
Psa6g0527 836 SMART LRR_CC_2 341 366 IPR006553 -
Psa6g0527 836 SMART LRR_CC_2 367 392 IPR006553 -
Psa6g0527 836 SMART LRR_CC_2 712 753 IPR006553 -
Psa6g0527 836 SMART LRR_CC_2 523 547 IPR006553 -
Psa6g0527 836 SMART LRR_CC_2 414 439 IPR006553 -
Psa6g0527 836 SMART LRR_CC_2 676 701 IPR006553 -
Psa6g0527 836 SMART LRR_CC_2 551 581 IPR006553 -
Psa6g0527 836 SMART LRR_CC_2 770 794 IPR006553 -
Psa6g0527 836 SMART LRR_CC_2 460 485 IPR006553 -
Psa6g0527 836 SMART LRR_CC_2 321 340 IPR006553 -
Psa6g0527 836 SUPERFAMILY F-box domain 169 200 IPR036047 GO:0005515
Psa6g0527 836 SUPERFAMILY RNI-like 574 827 - -
Psa6g0527 836 ProSiteProfiles F-box domain profile. 164 210 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0527 Psa-Chr6 17463428 17470262 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0527 - - gmx:100782842 1135.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g0527 6 17463428 17470262 Psa6g0527 6 17463428 17470262 ECH