Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0516 ATGGGAGTGGTTTTTTCAAAAACAAAAACCATGGGAGAACCTCAACAAAACCATGTCAACAACAACAACGTTGTTGGTGATGCTGATGATTCCACATGGTACGAGGAAGTTATCGATGAAGATCTCAAATGGTCTTTTAAACTCAACAGTGTGCTGCATAAAGCTATTAGTGAATACCAGGACATTGCTCTGTTAGATACAAAGCGTTTTGGAAAGGCCTTGATGCTTGATGGAAAGATGCAGAGTTCTGAAGCAGATGAATTCATTTACCATGAATGTTTAATTCATCCTCCTCTTTTATGTCATCCCAACCCAAAAACAGTGTATATTATGGGAGGTGGTGAAGGTTCTTCAGCTAGGGAAGCTTTGAAACACAAGTCAATGGAGAAAGTGGTTATGTGTGATATTGACAAGGAGGTGGTAGATTTCTGTAGAAAATACCTGGTTGCAAATAGGGATGCATTTGCTGACAATAAGCTTGACCTTGTCATCAACTGTGCCAAATCTGAGTTAGAGAAGAGAAATGAAAAGTATGATGTAATTGTTGGAGATTTGGCTGACCCACTTGAAGATGGGCCTTGTTATCAACTCTATACTAAGGACTTTTATGAGAATGTCGTCAAACCCAAACTCAATAAGAATGGCATCTTTGTCACACAGGCTGGACCAGCAGGTATCTTCTCACACAAAGAGGTCTTCACCTCTATTCATAACACCATAAAACAGGTCTTCAAATATGTGGTGGCATATGCAACTCATGTACCATCATTTGCTGATTCATGGGGATGGGTTATGGCTTCAGATCAACCAATCTTGATTGATGCTGTGGAAATGGACAAAAGAATTGATACAAGAATCCATGGAAAATTGCTCTATCTAGATGGTGTTTGGTTCCATTCATCAACTATCATGAATAAGACCGTCTCCAAATCGCTTCAGAATGAAACTCATGTGTACACTGAAGATAATGCTAGATTTATTCCTGGACATGGCATAGCTGTTCGTAGCTAA 1011 0.3937 MGVVFSKTKTMGEPQQNHVNNNNVVGDADDSTWYEEVIDEDLKWSFKLNSVLHKAISEYQDIALLDTKRFGKALMLDGKMQSSEADEFIYHECLIHPPLLCHPNPKTVYIMGGGEGSSAREALKHKSMEKVVMCDIDKEVVDFCRKYLVANRDAFADNKLDLVINCAKSELEKRNEKYDVIVGDLADPLEDGPCYQLYTKDFYENVVKPKLNKNGIFVTQAGPAGIFSHKEVFTSIHNTIKQVFKYVVAYATHVPSFADSWGWVMASDQPILIDAVEMDKRIDTRIHGKLLYLDGVWFHSSTIMNKTVSKSLQNETHVYTEDNARFIPGHGIAVRS* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0516 336 PANTHER SPERMINE SYNTHASE 17 332 - -
Psa6g0516 336 CDD AdoMet_MTases 112 220 - -
Psa6g0516 336 Pfam Spermine/spermidine synthase domain 87 264 - -
Psa6g0516 336 Gene3D Spermidine synthase, tetramerisation domain 31 83 IPR037163 -
Psa6g0516 336 PANTHER THERMOSPERMINE SYNTHASE ACAULIS5 17 332 - -
Psa6g0516 336 Pfam Spermidine synthase tetramerisation domain 33 84 IPR035246 -
Psa6g0516 336 Gene3D Vaccinia Virus protein VP39 84 335 IPR029063 -
Psa6g0516 336 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 32 312 IPR029063 -
Psa6g0516 336 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 31 268 IPR030374 -
Psa6g0516 336 Hamap Polyamine aminopropyltransferase [speE]. 32 313 IPR001045 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0516 Psa-Chr6 17062065 17067306 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0516 K18787 - gmx:100815510 550.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g0516 6 17062065 17067306 Psa6g0516 6 17062065 17067306 ECH