Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0488 ATGGAAAATATTACAAAGGATGCTGCATCCTCAAACAGCATCAATTCAGAACAGCCATACAGAACTTGGTATCACTTTCAGCCCCCCAAAAATTGGATGAATGATCCTAATGGACCTATGTACTATAAAGGAGTTTACCATTTCTTCTACCAATATAACCCTGATGGAGCCACCTTTGGTAAAAATATGGTATGGGCTCATTCTGTATCGAAAGATCTCATAAATTGGATTCATCTCAATGATGCTATTACACCAACTTGTGCTGGTGACATCAACAGTTGCTTCTCAGGATCAGCCACTATACTCCCAGGTGAAAAACCTGTTATGTTATACACAGGAATTGATGAAAAAAGACACCAAGTTCAAAACTTAGCTACGCCGAAAAATCTATCTGACCCTTACTTAAGGGAATGGGAAAAACACCCTCAAAATCCTTTGATGACAGCACCTAATGAAGTCGAAGAGCGTGAATTCAGAGACCCTTCAACTGCATGGAAAGGAAAAGATGGAAAATGGAGGGTCATAATTGGTGCTCAAAATGGTGATGAAGGAAAAGTTATTCTTTACAAAAGTGATGATTTTGTTACTTGGATAGTTGATCCTAATCCTTTTCTTGTAACAGAAGGTACTGGTGTTATTGAATGTCCAGATTTTTTTCCTGTGTATATCAATAGCACAAAGGGGGTTGATACATCTATGGAAAATTCAAGTGTTAGACATGTCTTGAAGATAAGCTATCAACGAACGCATATCGATTACTACTTAATTGGGAAATATGTATCTGATTCTGATCAAGAAAAGTTCATTCCTGATGAAAAATATAGTGGAACTTGGAATGACTTGAGATTTGACTATGGTAAATTTTTTGCTTCAAAGTCATTTTTTGACTATGCTAAGAACAGAAGAATATTATGGGCATGGGTGAGAGAAACTGACTCTAGACAAGATGACATTGAAAAAGGATGGGCTGGTCTACAGGCGATCCCTAGGAATTTTTGGCTTGATAAAAGCGGGAAGCAATTAATGCAATGGCCGATTGAAGAGTTAGAAAAACTACGTGACAATCAAGTTAGTATCACGGGAGAGACACTCCTAACTAGATCAACTCTTGAAGTAAAAGGTATCACTGCATCTCAGGTTGATGTGGAAGTCTTGTTTGAGCTACCTGATCTAGAAAGTGCTGAGTTACTAGATCCAAGTGAAGTTGATCCACAAGTACTCTCTAGTGAACAATATGCATCAAGAAAAGGGGTGATAGGGCCATTTGGTTTGCAAGCTTTAGCATCAGAAGACCAGACGGAGAGGACTACGATATCGTTCAGAATATATAGAGTCGTCGATAGATATATATGCTTGATGTGCAGTGATATGAGCAGGTCTTCATTGAGACAAGGCCTTGATAAAACCATATATGCAACTATATTTGACATTGATCCCAGTATCAAAACAATTTCACTTAGAAGCTTGATTGATAGATCCATTATTGAGAGTTTTGGAGATGGAGGGAGAGCTTGCATAACAAGTAGAGCTTATCCATTATATGCTATAGACAGAGATGCTCATCTTTTTGTATTCAATGATGGAAGCCAAAGTGTGGTTATCTCACAACTTAATGCTTGGAGCATGAAGCAAGCAGAGTTTGGCACAGAAAGTATTATATAG 1662 0.3797 MENITKDAASSNSINSEQPYRTWYHFQPPKNWMNDPNGPMYYKGVYHFFYQYNPDGATFGKNMVWAHSVSKDLINWIHLNDAITPTCAGDINSCFSGSATILPGEKPVMLYTGIDEKRHQVQNLATPKNLSDPYLREWEKHPQNPLMTAPNEVEEREFRDPSTAWKGKDGKWRVIIGAQNGDEGKVILYKSDDFVTWIVDPNPFLVTEGTGVIECPDFFPVYINSTKGVDTSMENSSVRHVLKISYQRTHIDYYLIGKYVSDSDQEKFIPDEKYSGTWNDLRFDYGKFFASKSFFDYAKNRRILWAWVRETDSRQDDIEKGWAGLQAIPRNFWLDKSGKQLMQWPIEELEKLRDNQVSITGETLLTRSTLEVKGITASQVDVEVLFELPDLESAELLDPSEVDPQVLSSEQYASRKGVIGPFGLQALASEDQTERTTISFRIYRVVDRYICLMCSDMSRSSLRQGLDKTIYATIFDIDPSIKTISLRSLIDRSIIESFGDGGRACITSRAYPLYAIDRDAHLFVFNDGSQSVVISQLNAWSMKQAEFGTESII* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0488 553 ProSitePatterns Glycosyl hydrolases family 32 active site. 25 38 IPR018053 GO:0004553|GO:0005975
Psa6g0488 553 CDD GH32_Fruct1-like 31 334 - -
Psa6g0488 553 SUPERFAMILY Arabinanase/levansucrase/invertase 16 346 IPR023296 -
Psa6g0488 553 SMART glyco_32 25 502 IPR001362 GO:0004553|GO:0005975
Psa6g0488 553 SUPERFAMILY Concanavalin A-like lectins/glucanases 345 544 IPR013320 -
Psa6g0488 553 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV6 12 550 - -
Psa6g0488 553 Gene3D - 358 542 - -
Psa6g0488 553 Pfam Glycosyl hydrolases family 32 N-terminal domain 25 345 IPR013148 -
Psa6g0488 553 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 12 550 - -
Psa6g0488 553 Pfam Glycosyl hydrolases family 32 C terminal 348 541 IPR013189 -
Psa6g0488 553 Gene3D Glycosyl hydrolase domain; family 43 29 357 IPR023296 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0488 Psa-Chr6 16147757 16150364 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0488 18 545 Glycoside Hydrolase AT3G13784 52.514 0.0 570
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0488 - K01193 gmx:100806220 832.787