Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0448 ATGGCCGACGAATCCCAATACGACACCACTCCACCCTCCCTCAAACGCAAGTACGATGAACAACCTCCTCACTCTAGACCCACCGGTTTCTCCGACGGACCTCCTCCTCCTTCCTACAACAACGTCCCTCCCCCCGCCACCACCGAGGTCGAACTCATGAAACAACGCGCCCAAGAAGTTGCCGCTCGTCTCCTCAGCGGCTCCGATATCGCTAAGCGTACCAAATTCGATGTCGTTACTCCCACCCCTTACGAATCCACCGATTTTAAGAATCAATATTCAGCTCCTTCGAGTATTCCTTCGTATACACATCAAGGTTCAAGCAAGAAGATTGAAATCCCTAATGGGAGGGTTGGTGTCATCATTGGAAAAGGTGGAGAAACCATCAAGTACCTTCAATTACAATCTGGTGCAAAAATCCAAGTCACTCGTGATATGGATGCTGACCCTAATTCTCCAAATAGATTGGTGGAGCTTACGGGAACTTCTGATGCTATTGCTACTGCTGAGAAACTAATCAATGAAGTTCTTGCTGAGGCTGAATCTGGAGGTAATGGCCTTGTTACTCGGAGAATGACTGGACAAGGAGGCGCTGATGAATTTTCGATGAAGATCCCTAATAACAAGGTTGGCCTTATCATTGGTAAAGGTGGAGAAACAATAAAGAGTATGCAAGCTACAACTGGAGCTAGAATTCAGGTGATTCCTCTTCATCTTCCCCCAGGTGACACCTCCACTGAAAGAACATTAAAAATTGAAGGGACCTCTGAACAAATTGATTCTGCAAAACAATTGGTCGATTCAATCCTCAGTGGCGAGAATCGACTTAGAAATCCATCAATGTCTGGTGGTTACTCTCAGCAAGGTTACCAAGCTCGGCCGCCCTCTAGCTGGGCTCCACCAGCTGCACCTATGCAACAATCTGGTTATGGCTATGGGCAACCTGGAGCATACTCTGGTCCATCACCTCAGTACAATATGCCTCAGCAGCCATATGCTGGTTATCCCCATTCATCTGGTGGATATTCTACCAACTGGGACCAGTCCACTGCAACTACCCAGCAGCCGTCTCATGCTGGGTATGATTATTATAATCAACAGTCTCAGCAACAGCAGAATCCTGGGGGTCCTGCAGCTCCAGCTGATGGAACTGCTTACAATTACAGTCAACCACCTTCCTCGGGTTATAACCAACCTGGACAGGGCTATGCTCAGGATGGTTATGGTGCATATCAACAACCACCACAATCAGGGTATGGTCAGCCACCATATGATCAGCAGCAAGGTTATGGCTCAGCCCCAAGCTATGGTTCAGCACAAGAAGGCCAAACTGCCAATTATGGCTCTCAAGGAGATTCATCACAAGTTCCTCCTGTCCAACCTTCCCAGCAAGGTTATGGTAGCAACCAACAGCCTAGCCCAAATGCTGCAAACTATGGACAACAAGGTACTGCTCAGCCAGGTTATGGGGTGCCACCAACCTCCCAAGCAGCTTATGGCAATCAACCTCAAGCGCAGTCTGGTTATGGACCCCCTCAACCTCAGAAGCCAAGTAGCACTCCGCCTGCATATGGACAATCACAGTCACCTAACGCAGCTGGAGGTTATGGTCAACCAGGTTACCCCCCTTCACAGCCTCCACCTGCATATTCCCAACCAGAAACAGGCTCTCAAAGAGCACCATCATCTGGTTATGGCGGTGCTGTTCAGTCAGGGTATGGTCCTCCATCATATGGTGCTCCAGCAGGCAGTCAAACCGGTTATGGTCAGGCCTATGGTGCTGGTTATCCTCAGGCCCCAGCATATTCTGCTGATGCTAATGCTGGTGGGAATGCTCGTGGGGGTAGCTATGATGGAGCACCTGCACAGGCAGCTCAGCAGACTAGTGTTGCCAAGTCACCTAAGAGCTGA 1911 0.4945 MADESQYDTTPPSLKRKYDEQPPHSRPTGFSDGPPPPSYNNVPPPATTEVELMKQRAQEVAARLLSGSDIAKRTKFDVVTPTPYESTDFKNQYSAPSSIPSYTHQGSSKKIEIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSPNRLVELTGTSDAIATAEKLINEVLAEAESGGNGLVTRRMTGQGGADEFSMKIPNNKVGLIIGKGGETIKSMQATTGARIQVIPLHLPPGDTSTERTLKIEGTSEQIDSAKQLVDSILSGENRLRNPSMSGGYSQQGYQARPPSSWAPPAAPMQQSGYGYGQPGAYSGPSPQYNMPQQPYAGYPHSSGGYSTNWDQSTATTQQPSHAGYDYYNQQSQQQQNPGGPAAPADGTAYNYSQPPSSGYNQPGQGYAQDGYGAYQQPPQSGYGQPPYDQQQGYGSAPSYGSAQEGQTANYGSQGDSSQVPPVQPSQQGYGSNQQPSPNAANYGQQGTAQPGYGVPPTSQAAYGNQPQAQSGYGPPQPQKPSSTPPAYGQSQSPNAAGGYGQPGYPPSQPPPAYSQPETGSQRAPSSGYGGAVQSGYGPPSYGAPAGSQTGYGQAYGAGYPQAPAYSADANAGGNARGGSYDGAPAQAAQQTSVAKSPKS* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0448 636 CDD KH-I 108 173 - -
Psa6g0448 636 MobiDBLite consensus disorder prediction 621 636 - -
Psa6g0448 636 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 109 185 IPR036612 GO:0003723
Psa6g0448 636 MobiDBLite consensus disorder prediction 1 47 - -
Psa6g0448 636 MobiDBLite consensus disorder prediction 281 302 - -
Psa6g0448 636 MobiDBLite consensus disorder prediction 410 513 - -
Psa6g0448 636 MobiDBLite consensus disorder prediction 611 636 - -
Psa6g0448 636 MobiDBLite consensus disorder prediction 391 578 - -
Psa6g0448 636 MobiDBLite consensus disorder prediction 28 43 - -
Psa6g0448 636 Gene3D K Homology domain, type 1 200 273 IPR036612 GO:0003723
Psa6g0448 636 CDD KH-I 200 266 - -
Psa6g0448 636 PANTHER K DOMAIN-CONTAINING PROTEIN-RELATED 58 630 - -
Psa6g0448 636 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 201 316 IPR036612 GO:0003723
Psa6g0448 636 ProSiteProfiles Type-1 KH domain profile. 198 266 - -
Psa6g0448 636 Gene3D K Homology domain, type 1 101 199 IPR036612 GO:0003723
Psa6g0448 636 SMART kh_6 105 178 IPR004087 GO:0003676
Psa6g0448 636 SMART kh_6 197 271 IPR004087 GO:0003676
Psa6g0448 636 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 58 630 - -
Psa6g0448 636 MobiDBLite consensus disorder prediction 520 534 - -
Psa6g0448 636 ProSiteProfiles Type-1 KH domain profile. 106 173 - -
Psa6g0448 636 MobiDBLite consensus disorder prediction 551 565 - -
Psa6g0448 636 Pfam KH domain 109 175 IPR004088 GO:0003723
Psa6g0448 636 Pfam KH domain 202 267 IPR004088 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0448 Psa-Chr6 14795285 14800643 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0448 K13210 - gmx:100813135 774.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g0448 6 14795285 14800643 Psa6g0448 6 14795285 14800643 ECH