Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0442 ATGGCTTCTTCTCCGTCTCCTCCTCCGCGTCACTCTTCTTCTCCAACTCCTCCTCCGTCGTACATCACTCACCTTCCCATTGCTCCATCTTCTCCCTCTCGTTCCAGTAAGAAGGTTTTAGAAGAAGAGGAACCGCGAGTTCCGATTCATGTAGTGACTAAAGCTTCTCAACTTCCGGTGGATTTTCTCGAACCATCGCCTCAGTCTAAGATCGTTATCGGTTTTGATTGTGAGGCTGTTGACCTGTGTCGCTATGGAAAACTTTGTATAATACAGCTTGCATTTCCGGATGCTATATACCTTGTTGATGCAATTGTGGGGGGAGATGTGCTTATCCAAGCCTGTAAGCCTGCACTTGAGTCTGATTATATCACAAAAGTGATTCATGATTGCAAACGTGACAGTGAGGCCTTGTACTTTCAATTTGGCATCAAGTTAAACAACGTGGTGGATACCCAGATTGCGTATTCACTTATAGAAGAGCAAGAAGGACAAAAGAGATTGCCAGATGACTACATTTCACTAGTTGCCCTCCTTGCAGATCCACGATATTGTGGTTTATCATATGTTGACAAGGAAGAAGTTCGGGTCCTTCTTCGACAGGACCCCAAGTTTTGGACTTACAGACCTTTATCTGAACAAATGATCCACTCTGCCGCCGATGATGTCCGTTTCCTTCTCTACATTTATCACCAAATGATGGCAAAATTAACTGAACGATCTTTATGGCATCTTGCTGTTCGTGGTGCCTTGTACTGCCGTTGTTTCTGTGTGAACAGTAATGATTATGCTGATTGGCCGTCTCTACCTCCAATTCCAGACATGCTGAAAGTTGATGAAAATGGTCCTGAAGAAGAAATTCTTTCAGTTCTTGATGTTCCCAAAGGAAAGATGGGATGCATTATTGGGAAAAAGGGGGCTTCTATTATGGCAATTAAGGAGTCTTGCAATGCTGAAATTCTCATTGGAGGTGCCAGGGGTCCACCTGACAAGGTCTTCATCTTAGGACCGGCAAAGCAAGTGAAGAAAGCTGAGGCTATGTTAAGGGGTAGATTATTGTATATCTGA 1068 0.4391 MASSPSPPPRHSSSPTPPPSYITHLPIAPSSPSRSSKKVLEEEEPRVPIHVVTKASQLPVDFLEPSPQSKIVIGFDCEAVDLCRYGKLCIIQLAFPDAIYLVDAIVGGDVLIQACKPALESDYITKVIHDCKRDSEALYFQFGIKLNNVVDTQIAYSLIEEQEGQKRLPDDYISLVALLADPRYCGLSYVDKEEVRVLLRQDPKFWTYRPLSEQMIHSAADDVRFLLYIYHQMMAKLTERSLWHLAVRGALYCRCFCVNSNDYADWPSLPPIPDMLKVDENGPEEEILSVLDVPKGKMGCIIGKKGASIMAIKESCNAEILIGGARGPPDKVFILGPAKQVKKAEAMLRGRLLYI* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0442 355 Gene3D K Homology domain, type 1 275 352 IPR036612 GO:0003723
Psa6g0442 355 PANTHER EGALITARIAN, ISOFORM B 23 352 - -
Psa6g0442 355 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 280 351 IPR036612 GO:0003723
Psa6g0442 355 CDD Egl_like_exo 61 257 - -
Psa6g0442 355 Pfam KH domain 291 349 IPR004088 GO:0003723
Psa6g0442 355 Gene3D - 4 255 IPR036397 GO:0003676
Psa6g0442 355 PANTHER - 23 352 - -
Psa6g0442 355 ProSiteProfiles Type-1 KH domain profile. 286 348 - -
Psa6g0442 355 MobiDBLite consensus disorder prediction 1 21 - -
Psa6g0442 355 CDD KH-I 291 348 - -
Psa6g0442 355 SMART 35exoneu6 49 238 IPR002562 GO:0003676|GO:0006139|GO:0008408
Psa6g0442 355 SUPERFAMILY Ribonuclease H-like 19 265 IPR012337 -
Psa6g0442 355 Pfam 3'-5' exonuclease 62 237 IPR002562 GO:0003676|GO:0006139|GO:0008408
Psa6g0442 355 SMART kh_6 285 353 IPR004087 GO:0003676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0442 K18740 - gmx:100788577 546.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g0442 6 14515146 14521673 Psa6g0442 6 14515146 14521673 ECH