Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0256 ATGAGAAGGGAGCAATCTCAGTCTCTTTGTGTAACAGATGTTGAGCCCGATATATTAAGTGGCTTACCGGGTCTTATAATAGACCAGATTCTCTCGCATTTGCCAATTAAGGAAGCAGTGAGAACAAGTATTCTATCTACCAAATGGAGGTACAAATGGGCCACGCTTCCGAATCTTGTGTTCGATAGTCAATGTTTGTCTGAAGGTTCAGATGACCTTTTAGTTATCAAGAACAAGCTTTCAAGAATTATTGATCATGTACTTTTACTCCATTCTGGGCCAATCAAAAAGTTCAAGCTATCGCATCGCGAGCTCGTTGGTGTGACTGATATCGATAGGTGGGCTCTTCACTTAGCTAGAAGGCCTGTTAACGAGTTTGTGCTGGAAATCTGGAAAGGGCAACGTTATAAGATACCTTCGTGTTTATTTTCTTGTCAAGGTTTACATCATTTAGAATTATTTAACTGTTGGATTAAACCGCCATCAACATTTAAAGGCTTTAGGAACTTGAAGAGTCTTGATCTGCAACATGTTACATTGGCTCAAGATGCTTTTGAAAACTTGATATCCAGTTGCCCTTTGCTTGAACGATTGACGCTAATGAACTTCGATGGTTTTAACAATCTTAATATTCATGCCCCAAATCTTCAGTTTTTTGACATTGGGGGTAAATTTGAGGATATTAGCTTTGAGAAGACTTCTCAATTATCTGTGGTATCCATTGGTCTGTATGTGAACTTCGAAAGCAATCAAAGTAGATTGCATGGACGCTCTAGCAATTTAGTCGAATTTTTAATCCATTTACCTCATATTCAGAGGCTGGAGATTCAAAGCTATTTTTTGAAGTATTTGGCTCTGGGGGTTGTTCCAGTAAAGCTTCCCGCCCCTTGCACTCATCTAAGTTTTCTTTCCTTACGCATAAACTTCAATGATTCAAAGGAAATTTCAGCTGCTCTTTGCTTGTTGAGAAGCTCACCTAATCTACGAGAACTAGAAATATTGGCACGGCCTGAGGAGCAGTCTGTTGCACATTTTTGGGAAGATGTCTATTTGGATTGGCCAGTCATGCGAGTGCAACATGTGAGAATAGATGGCATCTGTGGCATCAAACCTGAATTAGACTTCATCAGCTTTCTACTTTCATATTCTCCCGTGCTAGAAAGGATGGCTGTGAAACCTGCTTTAAACGTCGGACCAGAGTTGGTGAAAGAACTATTGCGATTCAGGAGAGCCTCGGGACGAGCTGAAGTTATTTATCTGGACTCTGTATGA 1272 0.4033 MRREQSQSLCVTDVEPDILSGLPGLIIDQILSHLPIKEAVRTSILSTKWRYKWATLPNLVFDSQCLSEGSDDLLVIKNKLSRIIDHVLLLHSGPIKKFKLSHRELVGVTDIDRWALHLARRPVNEFVLEIWKGQRYKIPSCLFSCQGLHHLELFNCWIKPPSTFKGFRNLKSLDLQHVTLAQDAFENLISSCPLLERLTLMNFDGFNNLNIHAPNLQFFDIGGKFEDISFEKTSQLSVVSIGLYVNFESNQSRLHGRSSNLVEFLIHLPHIQRLEIQSYFLKYLALGVVPVKLPAPCTHLSFLSLRINFNDSKEISAALCLLRSSPNLRELEILARPEEQSVAHFWEDVYLDWPVMRVQHVRIDGICGIKPELDFISFLLSYSPVLERMAVKPALNVGPELVKELLRFRRASGRAEVIYLDSV* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0256 423 Pfam F-box domain 19 51 IPR001810 GO:0005515
Psa6g0256 423 Gene3D Ribonuclease Inhibitor 96 351 IPR032675 -
Psa6g0256 423 SUPERFAMILY RNI-like 138 333 - -
Psa6g0256 423 Pfam Leucine Rich Repeat 169 193 IPR013101 -
Psa6g0256 423 PANTHER F-BOX PROTEIN-LIKE 13 389 - -
Psa6g0256 423 SUPERFAMILY F-box domain 16 67 IPR036047 GO:0005515
Psa6g0256 423 ProSiteProfiles F-box domain profile. 16 50 IPR001810 GO:0005515
Psa6g0256 423 PANTHER F-BOX/RNI/FBD-LIKE DOMAIN PROTEIN 13 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0256 Psa-Chr6 7770318 7773346 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0256 5 203 EF-hand Containing Proteins AT5G41840 27.982 9.63e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0256 - - gmx:100782183 679.478