Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6873 ATGAAAATCTCCAAAGCAACATGTTACTCTTCTTACACTAATCTCCTATGGCCATGCCAACCTCGTACGGAACAAAACCACATTGTTTTCTCCAACCGTTTTCGAGTCACCTGCACCGTAAGCCTTCTACTCTTATTCACCACCGTCTACATTTTCTGGCCGTCGGATCCATACCTCAAGATCGTACGGTTGAAACTGAAGAAGATTAAGGTGCACCGTGTGCCGCACATCACCGTAGACATCTCCATGCTCTTCACGCTGAGAGTGCAAAACGCTGACGTGTATTCCATGGACTTCGGTGCGGTTGACGTGGCAGTATCTTATAGAGGGAAGCCACTAGGGCACGTGACATCGGAGAATGGTCACGTGAGAGCTATGGGTTCTTCGTTTGTGGATGCTGACGCGGAATTTTCCGGCATCGGTGTGTTGCCGGAGATATTGTTACTGCTACAGGATTTGGCTAAGGGAACGGTGCCATTTGATACGGTTAGTCAAGTTAGGGGCAAAATGGGGATTTTCTTCTTTCACTTTCCCATTAAGGCTAAATTAACATGCGAGGTTTTGGTGAGTATGATAAATCAAACTATTGTTCGTCAACATTGTACCTATGAGTGA 615 0.4618 MKISKATCYSSYTNLLWPCQPRTEQNHIVFSNRFRVTCTVSLLLLFTTVYIFWPSDPYLKIVRLKLKKIKVHRVPHITVDISMLFTLRVQNADVYSMDFGAVDVAVSYRGKPLGHVTSENGHVRAMGSSFVDADAEFSGIGVLPEILLLLQDLAKGTVPFDTVSQVRGKMGIFFFHFPIKAKLTCEVLVSMINQTIVRQHCTYE* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6873 204 PANTHER EXPRESSED PROTEIN 12 202 - -
Psa5g6873 204 Pfam Late embryogenesis abundant protein 86 184 IPR004864 -
Psa5g6873 204 Gene3D - 55 188 - -
Psa5g6873 204 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 12 202 - -
Psa5g6873 204 SUPERFAMILY LEA14-like 43 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6873 Psa-Chr5 566012088 566013589 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6873 - - cam:101505811 353.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6873 5 566012088 566013589 Psa5g6873 5 566012088 566013589 ECH
Psa5g6873 5 566012088 566013589 Psa7g5775 7 482732056 482733469 PCT