Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6233 ATGGGTGATAAGAGTAACAATGATTTATATCCTGGAGATATTGCTAAGCGGCTCAACCTGATATCTAAAGTTCATGGTCTAGAACAAGCGGAGCGGTTTTTCAAAGACGTCCCTGAAGCTAAAATCGGGTTCAAGGTCTATGCTGCTCTTTTGAGCTGCTATGCAGAACATAAATCTTTGGAGGAAGCAGAGGCTATCATGAAGAAAATCAAGAAGTTGCATCCCATGCACTTGACAGTGTGTTATAATATGATGTTAAAACTATATGCTCAGAAAGGTAAATCTGAAAAACTGGATAGGTTGATGCAAGAAATGAAAGAGAAGGACATCTGCAACGGTGCTACGTTTACCATTCGGTTGAATGCTTACGCGATTTCTAAAGACGTAGAGGGGATGGAGAAGCTACTAATGCAAATGGAAGCCGATCCCATAGCAACTGTGGATTGGTATACATATGCTACAGCAGCGAATGGTTATATGAAAGCTGGGAATGTTGAGAAGGCCTCGTTAATGCTGAAGAAATCAGAAAATTTAGTTAATGGCCAGAATAGGAGGATTGCGTATGAATCTCTTCAAACTATGCATGCTGCGATTGGAAACAAGGATGAGGTTTATCGACTTTGGAATAGGTGTAAGAATCTTAGAAATTCTCTCAACTCAAGTTACTTATGTATGCTAAGTTCATTAGTGAAACTGGATGACATTGAAGGCGCAGAGAAGATTTTCCAAGAATGGGAATCTGGACATACGAGTTACGACATCAGAATTTCAAATATGATGATCACTGCTTACTGTAAATGGGGTCTTGTTGATAAGGCCGAGGCATATATCAAGAAACTTTTGGATAACGGCAAGGTATTGGATGGAAGTACATGGGACCGTATGTCGTCTGCATATCACATGGATAATGATATGGAAAAAGCAGTTCAAACATTGAAGAAAGCAACGCTGGGAAGTCGACGAGGATGGAAACCTAGCGCCGTGACATTGAGTGCGTGCATCAAGTACCTGAAGGAAAAACTTGATGTGGAACAAGCCTTTGAGATTCTGAAATTGTTCAAAGAAAAGGGTCATATCTCAGACACTGCCTATGATAGACTAGTAAGCTATGTTCATGGTGAAATACCTGATACAGAAGCCTTTGATCTGATTAAACAAGATTTAAAGTATGAAAAGGTTCAACTTCATGATGAAGAAAACTAA 1203 0.3965 MGDKSNNDLYPGDIAKRLNLISKVHGLEQAERFFKDVPEAKIGFKVYAALLSCYAEHKSLEEAEAIMKKIKKLHPMHLTVCYNMMLKLYAQKGKSEKLDRLMQEMKEKDICNGATFTIRLNAYAISKDVEGMEKLLMQMEADPIATVDWYTYATAANGYMKAGNVEKASLMLKKSENLVNGQNRRIAYESLQTMHAAIGNKDEVYRLWNRCKNLRNSLNSSYLCMLSSLVKLDDIEGAEKIFQEWESGHTSYDIRISNMMITAYCKWGLVDKAEAYIKKLLDNGKVLDGSTWDRMSSAYHMDNDMEKAVQTLKKATLGSRRGWKPSAVTLSACIKYLKEKLDVEQAFEILKLFKEKGHISDTAYDRLVSYVHGEIPDTEAFDLIKQDLKYEKVQLHDEEN* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6233 400 Pfam PPR repeat 221 246 IPR002885 -
Psa5g6233 400 Pfam PPR repeat 47 72 IPR002885 -
Psa5g6233 400 Pfam PPR repeat 151 174 IPR002885 -
Psa5g6233 400 Pfam PPR repeat 258 284 IPR002885 -
Psa5g6233 400 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 287 IPR002885 -
Psa5g6233 400 Pfam PPR repeat family 79 124 IPR002885 -
Psa5g6233 400 PANTHER OS10G0501200 PROTEIN 1 378 - -
Psa5g6233 400 SUPERFAMILY TPR-like 150 315 IPR011990 GO:0005515
Psa5g6233 400 TIGRFAM PPR: pentatricopeptide repeat domain 258 288 IPR002885 -
Psa5g6233 400 TIGRFAM PPR: pentatricopeptide repeat domain 80 111 IPR002885 -
Psa5g6233 400 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 78 112 IPR002885 -
Psa5g6233 400 PANTHER OS12G0527900 PROTEIN 1 378 - -
Psa5g6233 400 Gene3D Tetratricopeptide repeat domain 1 130 IPR011990 GO:0005515
Psa5g6233 400 Gene3D Tetratricopeptide repeat domain 187 370 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6233 Psa-Chr5 531247728 531250736 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6233 9 368 EF-hand Containing Proteins AT1G02150 34.060 2.02e-62 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6233 - - gmx:100818231 517.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6233 5 531247728 531250736 Psa5g6233 5 531247728 531250736 ECH