Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6062 ATGGAAATTGGTTTTCTGGACGAATCAGTTTCTTCTGCTATCTCAGAAAATGACATAGTAGCATCTGCTGTGCTGTCAGGGAACCGTAATTTTGAGGGCCGAGTGCATCCCTTGACTCGCGCTAACTATCTTGCCTCACCTCCTCTGGTTGTGGCTTATGCTCTTGCTGGCACGGTTGACATTGACTTTGAAAAGGAGCCGTTAGGGACAGGAAAGGATGGCAAGAATGTCTTCTTGAGGGATATTTGGCCTTCCACTGAAGAAATTGCACAGACTGTCCAATCCAGTGTGTTGCCTGACATGTTCCGAAGTACATATGAAGCTATTACTAAGGGTAATCCTATGTGGAACGAACTACAAGTTCCTGCTGAGAAGCTGTACTCATGGGACACCAACTCAACATATATTCATGAACCTCCATACTTCAACCCGTACTGGTACCTAGGAGGTGGACCTCATGGTGTGAAAGATGCTTATTGCCTGCTGAATTTTGGTGACAGTATAACAACTGATCACATTTCTCCTGCTGGAAACATTAACAAGGACAGTCCTGCTGCAAAGTACCTTATTGACCGTGGGGTGGAAAAGAAGGACTTCAACTCTTATGGAAGTCGTCGTGGCAATGATGAAGTAATGTCTAGGGGAACTTTTGCTAACATACGTCTTGTAAACAAGCTATTGAAGGGGGAAGTTGGCCCCAAAACAGTGCACATTCCAACAGGGGAGAAGCTTTACGTTTTTGATGCAGCAGAGAGATACAAGGCTGCAGGGCATGCCACCATTGTACTGGCTGGAGCTGAATACGGCAGTGGAAGTTCCAGGGATTGGGCCGCCAAGGGTCCCATGCTATTGGGAGTCAAAGCTGTGATATCCAAAAGTTTTGAGAGAATCCATCGCAGTAATTTGGTAGGAATGGGTATTATTCCCCTTTGCTTTAAATCTGGTGAGGATGCTGACACCTTGGGATTGACTGGCCATGAACGTTATACCATTGACCTTCCAAATAAAATCAGCGAGATAAAGCCTGGCCAAGATGTTACTGTCACAACTGATAACGGAAAGTCTTTCACATGCACAGCTCGCTTTGACACTGAGGTGGAATTGGAGTACTTTAACCATGGAGGCATTCTTCCCTATGTCATTAGGAACCTCACTAAGCAGTAA 1164 0.4545 MEIGFLDESVSSAISENDIVASAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFEKEPLGTGKDGKNVFLRDIWPSTEEIAQTVQSSVLPDMFRSTYEAITKGNPMWNELQVPAEKLYSWDTNSTYIHEPPYFNPYWYLGGGPHGVKDAYCLLNFGDSITTDHISPAGNINKDSPAAKYLIDRGVEKKDFNSYGSRRGNDEVMSRGTFANIRLVNKLLKGEVGPKTVHIPTGEKLYVFDAAERYKAAGHATIVLAGAEYGSGSSRDWAAKGPMLLGVKAVISKSFERIHRSNLVGMGIIPLCFKSGEDADTLGLTGHERYTIDLPNKISEIKPGQDVTVTTDNGKSFTCTARFDTEVELEYFNHGGILPYVIRNLTKQ* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6062 387 Gene3D - 86 144 - -
Psa5g6062 387 SUPERFAMILY LeuD/IlvD-like 126 384 - -
Psa5g6062 387 Pfam Aconitase family (aconitate hydratase) 17 57 IPR001030 -
Psa5g6062 387 Gene3D Aconitase, domain 3 2 85 IPR015931 -
Psa5g6062 387 PANTHER ACONITATE HYDRATASE 4 387 - -
Psa5g6062 387 Pfam Aconitase C-terminal domain 186 313 IPR000573 -
Psa5g6062 387 PANTHER ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER 4 387 IPR006249 -
Psa5g6062 387 SUPERFAMILY Aconitase iron-sulfur domain 7 122 IPR036008 -
Psa5g6062 387 Gene3D Aconitase, domain 4 151 386 IPR015928 -
Psa5g6062 387 CDD AcnA_IRP_Swivel 163 333 IPR044137 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6062 Psa-Chr5 519247590 519250436 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6062 K01681 - gmx:100793264 702.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6062 5 519247590 519250436 Psa7g3605 7 297188217 297197202 PCT