Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5996 ATGGCCACACCAAATGTTGATTCCACTACAAACTTCACACACACTTTGAAAGCCTTGGTTAAGAAATTTTGGACTAAGTTAGTAAAGGTCACAAAATTTATAAAAGAGATTGGGCAAGATGATCCTAGAAGGTTTATTCATTCCTTCAAAGTTGGATTAGCATTAGTTTTGATTTATATTTTGCATCATTTTCGTCCATCTTTCTATGGTTTTGGTGACAACATTATTTGGGCTGTTCTTACTGTTGTTATTGTCCTTGAACTTTCCGTGGGTGCAACACTCGGAAAAGGCTTCAATCGAATGTTGGCGACAGGGTTAGCAGGCGCTCTCGGTGTTGCGAGTAATAAAATCGCATCACTTTGTGGTGACAAGGGTAAAGTCGTGATGACTTCAATTTTTGTCTTTGTGATAGCTGAAAGAGTGACATTTATGAGATTTTCACCTAAATTGAAGGCAAGATATGATTATGGGATGATCATATTCATCTTAACATTTTGTTTGGTATCTCTTTCGGATGTGAGTGGACATGAACTTCTAGAAATGGCATATGAAAGGTTATTAACAATTATAATTGGAAGCTCTATAGCTATCACAGTATGCATTTTCATATGTCCTGTTTGGATTGGAAAGGATCTTCACAATAAGATTGCTGCCAATATTGAAAAAGTTGCTGACTTTTTAGAAGGATTTGGAGACGAGTACTTCAACCATTCAGAGAATTCAGAAGAAGATGAGAATGATAAAGAATTTCTTCATAGATATAAAAGAGTTCTCTCTTCAAAAAGCAGCGAAGAAACAATGGCAGTTTTGGCCAGATGGGAACCTCGTCATGGCCGGTTTAAATTTCGTCATCCATGGAAGCAATACTTGAAAATTGGAAACTTGACGCGGTTTTGTGCATACAAAGTCGAAGCTCTTAGTGTATATCTTCACAATTCTAAAACACCTTATGAATTTCGAAGCAGGATTCAAGAATCATGCACAAACATTAGCTTGGAATCCGGGAAGGCCTTAAAAGAAGCATCATTGATGATTAAAAATATGTCAAAGTCATCAACTCCAAATTTTCATGTTTCAAATGCTAAAAATGCTGCTGAATCTCTTAAATCTGTATTAAGAACAAATCCTTGGGAAGGGGCTGATCAGTTGGAGATTATACCAGCTTCTACGGTGGCATCATTGCTTATTGATATTGTGGTTTGTGTTGAGCAAATTTGTGAAGCTGTTGAAGAATTAGCATCACTTGCAAATTTTGTGCCGATAGAGTTACTTCATAGGGGAACGGTGCAGCCGGTTTCGGATAGCGACGGTTCGGTTCATGTTGTTACCGTTGCCGAATGA 1341 0.3751 MATPNVDSTTNFTHTLKALVKKFWTKLVKVTKFIKEIGQDDPRRFIHSFKVGLALVLIYILHHFRPSFYGFGDNIIWAVLTVVIVLELSVGATLGKGFNRMLATGLAGALGVASNKIASLCGDKGKVVMTSIFVFVIAERVTFMRFSPKLKARYDYGMIIFILTFCLVSLSDVSGHELLEMAYERLLTIIIGSSIAITVCIFICPVWIGKDLHNKIAANIEKVADFLEGFGDEYFNHSENSEEDENDKEFLHRYKRVLSSKSSEETMAVLARWEPRHGRFKFRHPWKQYLKIGNLTRFCAYKVEALSVYLHNSKTPYEFRSRIQESCTNISLESGKALKEASLMIKNMSKSSTPNFHVSNAKNAAESLKSVLRTNPWEGADQLEIIPASTVASLLIDIVVCVEQICEAVEELASLANFVPIELLHRGTVQPVSDSDGSVHVVTVAE* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5996 446 Pfam Aluminium activated malate transporter 36 413 IPR020966 GO:0015743
Psa5g5996 446 PANTHER ALUMINUM ACTIVATED MALATE TRANSPORTER FAMILY PROTEIN 2 425 - -
Psa5g5996 446 PANTHER ALUMINUM-ACTIVATED MALATE TRANSPORTER 10 2 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5996 Psa-Chr5 515538524 515541078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5996 29 444 Miscellaneous Gene Families AT1G08440 44.860 8.34e-132 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5996 - - gmx:100786663 611.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5996 5 515538524 515541078 Psa5g5996 5 515538524 515541078 ECH
Psa5g5996 5 515538524 515541078 Psa7g4708 7 407558501 407561705 PCT