Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5987 ATGATCAAAGAGTGCGAGTACCACGAAATCGAACGCCACCAACTCATCCGCCGTGTATTTGCCGGAATCCTCACCTTCGTAATCCTTATACTCCTCACTATCTTCCTAATCTGGATCATCCTCCAACCAACCAAACCGCGTTTCCTCCTCCAAGACGTAACCGTCTTCACCTTCAACCTCACCTCCACCGGAGAAACACCATCCCTAACCACCCCAACACCAAACACTCTAACCCTCACAATTCAAGTTACTCTTTCATCCTTAAATCCGAACTCAAAAATCGGCATTTACTATAATAAACTTGACGCATACGCTTCCTATAGAGGACAACAAATATCTCTTGCAACTGGTGTTCCAGAAACTTATCAAGGTCACCGTGACATCTCCGTTTGGTCGCCGATGATATATGGTTTGGCTGTTCCGGTTTCACCTTACTTGTCTGAGATTCTGCGGCAGGATCTAACCTCAGGTGGAGTTTTAGTCAACATTAAAGTCAACGGGAGAGTTAAGTGGAAGGTTGGGACTTGGGTTTCTGGAAGGTACCATATTGATGTGAACTGTCCGGCGTTTATACGGGTTGCCGGCGATAAAGGTGACGGGTTCGGAGTTTCTGGTCCGGCGGTTAAGTTTCAGTTATCACAAAGTTGTGTTGTTGATGTTTAA 663 0.4585 MIKECEYHEIERHQLIRRVFAGILTFVILILLTIFLIWIILQPTKPRFLLQDVTVFTFNLTSTGETPSLTTPTPNTLTLTIQVTLSSLNPNSKIGIYYNKLDAYASYRGQQISLATGVPETYQGHRDISVWSPMIYGLAVPVSPYLSEILRQDLTSGGVLVNIKVNGRVKWKVGTWVSGRYHIDVNCPAFIRVAGDKGDGFGVSGPAVKFQLSQSCVVDV* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5987 220 Pfam Late embryogenesis abundant protein 84 187 IPR004864 -
Psa5g5987 220 PANTHER OS05G0367900 PROTEIN 7 220 IPR044839 GO:0098542
Psa5g5987 220 PANTHER LATE EMBRYOGENESIS ABUNDANT PROTEIN 7 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5987 Psa-Chr5 515055308 515057062 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5987 20 187 EF-hand Containing Proteins AT5G21130 23.529 8.76e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5987 - - pvu:PHAVU_005G120900g 324.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5987 5 515055308 515057062 Psa5g5987 5 515055308 515057062 ECH
Psa5g5987 5 515055308 515057062 Psa7g4298 7 349562766 349563853 PCT