Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5798 ATGTGGAGAGATCCAGGAGTTTCAGCTGATTCTTTCTATCAAACTCGCCCTGATTGCACTGATGTTCCCATTTCTCGATTTAAGATCAAGCCTGGTAAAACACTAAGTCCGAGAAAATGGCATGCTGCGTTTACGCAAGAAGGATATCTGGATATAGGCAAGACTTTGAGACGAATCTACCGAGGGGGAGTCCATCCATCAATTAGGGGAGAAGTTTGGGAATTTCTCCTTGGCTGCTACGACCCGAAGAGTACATTTGACGAAAGAGATCGAATAAGACAACGCCGAAGGAGGCAATATGCTACATGGAAAGAAGAATGTCGCCAATTGTTTCCTCTTGTTGGAAGTGGTAGATTTATCACATCACCCGTGATTACCGATGATGGCCAACCAATTCCAGATCCATTGGTTATGCCAGAAACCAATATAGCCAATGGATCGAGTGTACTTCCTCAAGATGATAATAGGCTTTCAAGTATGGATTCTGCGAATAATTTAGAAAATGTGACAGACAAGAAACTAATCCAGTGGATGTTAACTCTCCATCAAATAGGTCTTGATGTGGTTCGCACTGATAGGACAATGGTGTTTTATGAGAAGCAAGAAAACTTGTCAAAGCTTTGGGATATTCTTGCCGTTTATGCTTGGATAGATAAAGAAGTTGGGTACGGTCAAGGGATGAGTGACCTATGCTCCCCAATGATAATTCTTCTTGATGACGAAGCAGACGCATTTTGGTGCTTTGAGCGTATGATGCGCAGACTTCGAGGAAATTTCAGATGCACTGGTCGCACTCTTGGGGTGGAGGCTCAACTAAGTAATTTGGCTTCAATTACTCAAGTCATTGATCCAAAACTTCATAAACATATAGAACATATTGGTGGAGGTGACTATGTGTTTGCTTTTCGGATGCTAATGGTTCTGTTTCGTCGAGAATTTTCCTTTTGTGATTCATTGTACCTTTGGGAGATGATGTGGGCTCTAGAATATGATCCTCACATGTTCTTGATGTATGAAGAAGCTCAAACAGCTTCCGAAAAAGCTGAGAGCATCAAAGGAAAAGCAAAGTCAATCCGACAATGTGGAAAATACGAGAGAGAAAATTTGAAAAGTGGAGCAAAGAATACCGAAACTCCTCTTCCTATATCAGTTTTCCTCGTTGCCAGTGTGTTGAAAGATAAAAGTACAATACTACTCCATGAAGCGCGAGGCTTGGATGATGTTGTCAAGATATTGAATGACACAACAGGAAATCTAGATGCCAAAAAGGCTTGTATCGAGGCTATGAAGCTTCACAAAAAATATTTGAAAAAGGCCAAGAAAGCTTAG 1329 0.4123 MWRDPGVSADSFYQTRPDCTDVPISRFKIKPGKTLSPRKWHAAFTQEGYLDIGKTLRRIYRGGVHPSIRGEVWEFLLGCYDPKSTFDERDRIRQRRRRQYATWKEECRQLFPLVGSGRFITSPVITDDGQPIPDPLVMPETNIANGSSVLPQDDNRLSSMDSANNLENVTDKKLIQWMLTLHQIGLDVVRTDRTMVFYEKQENLSKLWDILAVYAWIDKEVGYGQGMSDLCSPMIILLDDEADAFWCFERMMRRLRGNFRCTGRTLGVEAQLSNLASITQVIDPKLHKHIEHIGGGDYVFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPHMFLMYEEAQTASEKAESIKGKAKSIRQCGKYERENLKSGAKNTETPLPISVFLVASVLKDKSTILLHEARGLDDVVKILNDTTGNLDAKKACIEAMKLHKKYLKKAKKA* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5798 442 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 1 442 - -
Psa5g5798 442 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 267 435 IPR035969 -
Psa5g5798 442 SMART tbc_4 60 352 IPR000195 -
Psa5g5798 442 PANTHER RAB-GTPASE-TBC DOMAIN-CONTAINING PROTEIN-RELATED 1 442 - -
Psa5g5798 442 ProSiteProfiles TBC/rab GAP domain profile. 63 329 IPR000195 -
Psa5g5798 442 Pfam Rab-GTPase-TBC domain 158 335 IPR000195 -
Psa5g5798 442 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 39 289 IPR035969 -
Psa5g5798 442 Gene3D - 266 442 - -
Psa5g5798 442 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 159 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5798 Psa-Chr5 502741973 502746542 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5798 - - aprc:113854580 746.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5798 5 502741973 502746542 Psa5g5798 5 502741973 502746542 ECH
Psa5g5798 5 502741973 502746542 Psa7g3731 7 314380947 314383576 PCT