Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5729 ATGGCGGGTAGAGGTAAAACACTCGGTTCCAGCACTCCTAAGAAGTCGACCTCAAGAAGCAACAAGGCCGGCCTCCAGTTCCCCGTTGGCCGTATCGCCCGTTTCCTCAAGGCTGGCAAATACGCCGAGCGTGTCGGCGCTGGTGCTCCGGTATACCTCGCTGCCGTCCTGGAATATCTCGCCGCTGAGGTTCTTGAATTGGCTGGAAATGCTGCAAGGGACAACAAGAAGACTAGAATTGTGCCAAGACATATTCAATTGGCTGTTAGGAACGATGAAGAATTGAGCAAGCTTCTTGGTGATGTTACCATTGCCAATGGTGGTGTGATGCCCAATATTCACAACCTGTTGCTTCCAAAGAAAGCTGGCTCCTCCAAGGGTGCTGGTGACGATGAATGA 399 0.5188 MAGRGKTLGSSTPKKSTSRSNKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGSSKGAGDDE* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5729 132 Pfam Core histone H2A/H2B/H3/H4 9 90 IPR007125 GO:0003677
Psa5g5729 132 Gene3D Histone, subunit A 1 128 IPR009072 GO:0046982
Psa5g5729 132 MobiDBLite consensus disorder prediction 9 23 - -
Psa5g5729 132 SUPERFAMILY Histone-fold 17 121 IPR009072 GO:0046982
Psa5g5729 132 PANTHER HISTONE H2A.6 2 128 - -
Psa5g5729 132 MobiDBLite consensus disorder prediction 1 23 - -
Psa5g5729 132 SMART h2a4 4 124 IPR002119 GO:0000786|GO:0003677|GO:0030527
Psa5g5729 132 ProSitePatterns Histone H2A signature. 23 29 IPR032458 -
Psa5g5729 132 CDD H2A 9 121 IPR002119 GO:0000786|GO:0003677|GO:0030527
Psa5g5729 132 PANTHER HISTONE H2A 2 128 IPR002119 GO:0000786|GO:0003677|GO:0030527
Psa5g5729 132 Pfam C-terminus of histone H2A 93 126 IPR032454 -
Psa5g5729 132 PRINTS Histone H2A signature 15 37 IPR002119 GO:0000786|GO:0003677|GO:0030527
Psa5g5729 132 PRINTS Histone H2A signature 44 59 IPR002119 GO:0000786|GO:0003677|GO:0030527
Psa5g5729 132 PRINTS Histone H2A signature 59 72 IPR002119 GO:0000786|GO:0003677|GO:0030527
Psa5g5729 132 PRINTS Histone H2A signature 73 87 IPR002119 GO:0000786|GO:0003677|GO:0030527
Psa5g5729 132 PRINTS Histone H2A signature 101 119 IPR002119 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5729 Psa-Chr5 498585382 498586680 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5729 K11251 - han:110929671 229.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5729 5 498585382 498586680 Psa5g5729 5 498585382 498586680 ECH