Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5714 ATGTCTACTTCTCTTGATTATGATCTCTCACAAAAAAACAAAAAAGCTCTTGACATCATAGAACATATTACTACACACGCATATGAAATCCAAAAGAAAGTCTTAGCTGAAATTCTGTCTCATAATGCAAATGTTGAGTATTTACAAAGACATGGTCTCAATGGCCAAATAGATAGTGAAACCTTCAAGAAACTTCTTCCTGTCATAACCTATGAAGATATTCAAAATGATATTAACCGTATTGTCAATGGTGATACTTCTTCAATCCTCACTGCCAACCCCGTTTCACACTTTCTCCTTAGCTCAGGAACATCTGGTGGTAAGACGAAGTTGATACCAACAACAGAAGAAGATTTTGGAAGAAGATCTTTACTATATAGTCTATTGATGCCAATAATGAATCAATTTGTTCCTGACCTAGATAAAGGAAAAGGAATGTACCTAATGTTTATAAGAAATGAATCTGAAACACCAGGAGGCATTAAAGCTAGTACATCCCTCACAACATATTACAAAAGTTCTTATTTTATAAACAGACCTTACAATCCATACACAAACTTCACTAGTCCAAATGAAACTATTCTTTGTGTTGACTCATACCAAAGTATGTATTCACAACTTCTATGTGGTCTTTGTCAAAACAAGGAAGTCTTTCGTATCGGTGCTGTTTTCGCTTCGGGTCTCATTCGGGCCATTGGGTTCATCGAGAAAAATTGGTCACTTTTTTGCAATGATATAAGAACAGGAACAATTAATCCTCTCATCACTGACATTTCAGTGAGAGAGGCTGTTATGAAAATTCTTAAATCTGACAAAAATCTTGCTGATTTTATCCATAGTGAGTGTAGCAAGGGTTCTTGGCAAGGCATTATAACTAGGTTGTGGCCTAATACTAAGTATGTTGATGTTATTGTGACAGGATCAATGTCACAGTATATTCCTACTTTGGATTATTATAGTAATGGTCTTCCACTTGTTTGTACTATGTATGCTGCTAGTGAATGTCTCTTTGGTGTTAACCTTAATCCTCTTTGTAAACCTTGTCATGTGTCTTATACCCTTATCCCTACCATGTGCTACTATGAATTCTTACCGGTTAATAGAAGTAATAACGATTCTCTAAATGAGAAGGAAAAGCAAGAGTTGGTGGATCTTGTTGATGTCAAGCTTGATCAAGAATATGAGCTTGTTGTTACCACTTATGCTGGACTTTATAGGTACAAAGTGGGAGATGTATTGAAAGTGACTGGATTCAAAAACAAGGCACCTCAATTCGAATTTGTATGCAGAAAAAACGTTGTTCTAAGCATAGATTTAGACAAAACAGACGAAGTTGAGCTACAAAATGCAATAAAAAATGCGGCCACACATTTAGCACCATATGATGCAGATGTAGCAGAGTACACTAGTTATGCAGACACAAGATCAATTCCAGGACACTATGTGTTGTATTGGGAATTAAATCTTAAAGGGTCAACAACAATTCCAGATTGTGTTTATGAAGATTGTTGTTTAACTATTGAAGATTCACTTAACAGTACTTATCGACAAGGTCGCGTTTTAGAGAAATCAATTGGGGCACTTGAGATTAAGATTGTGGAGCAGGGGACATTTGATAAACTTATGGATTATGCTATTAGTTGTGGAGCTTCAATAAATCAATACAAAACTCCTAGGTGTGTCAAATCTGCACCTGTTGTGGAGCTTTTGGAGTCAGGAGTTATGGCAGAGTATTTTAGTCCTAAATGTCCACAATGGGTTCCTGGTCCTAAGGAATGGATTAATAGTTAG 1791 0.3607 MSTSLDYDLSQKNKKALDIIEHITTHAYEIQKKVLAEILSHNANVEYLQRHGLNGQIDSETFKKLLPVITYEDIQNDINRIVNGDTSSILTANPVSHFLLSSGTSGGKTKLIPTTEEDFGRRSLLYSLLMPIMNQFVPDLDKGKGMYLMFIRNESETPGGIKASTSLTTYYKSSYFINRPYNPYTNFTSPNETILCVDSYQSMYSQLLCGLCQNKEVFRIGAVFASGLIRAIGFIEKNWSLFCNDIRTGTINPLITDISVREAVMKILKSDKNLADFIHSECSKGSWQGIITRLWPNTKYVDVIVTGSMSQYIPTLDYYSNGLPLVCTMYAASECLFGVNLNPLCKPCHVSYTLIPTMCYYEFLPVNRSNNDSLNEKEKQELVDLVDVKLDQEYELVVTTYAGLYRYKVGDVLKVTGFKNKAPQFEFVCRKNVVLSIDLDKTDEVELQNAIKNAATHLAPYDADVAEYTSYADTRSIPGHYVLYWELNLKGSTTIPDCVYEDCCLTIEDSLNSTYRQGRVLEKSIGALEIKIVEQGTFDKLMDYAISCGASINQYKTPRCVKSAPVVELLESGVMAEYFSPKCPQWVPGPKEWINS* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5714 596 Pfam GH3 auxin-responsive promoter 20 563 IPR004993 -
Psa5g5714 596 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 7 593 IPR004993 -
Psa5g5714 596 PANTHER - 7 593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5714 Psa-Chr5 497472912 497475521 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5714 4 580 EF-hand Containing Proteins AT1G23160 49.659 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5714 K14487 - gmx:100797120 967.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5714 5 497472912 497475521 Psa5g5714 5 497472912 497475521 ECH