Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5656 ATGGCCAACTTCCTCGCCCAGTTCCAAACCATCAAGAACTCTACCGATCGCCTCGTCATTTCAGTGGAGGATGTGAGTGATTTGTGGCCAACTGTCAAGCCTGCTTTTGAAGCGCGGTTGCCGTTCAAGAGGGCGAGTTTGAATAACAAGGCGAGAAACCCTGTATTGGTGGAGAAGTTGTCGGCGGAGTTCATATTAACTACAGATTCAAGGCTTCGTAGCCGGTTCCCTCAGGAGCAGTTGCTGTTCTGGTTTCGAGAGCCGTATGCAACTGTCGTGCTTGTTACCTGTGAGGATCTTGATGAGTTTAAAACCATCCTTAAACCACGCTTGAAACTAATTGTCCAGAATGATGAAAGGGAATGGTTTATTGTATTTGTATCTAAAGCTCATCCAGCTAATGACCAGGCAAACAAAATGGCAAAGAAAGTATATGCTAAACTTGAAGTTGATTTTAGCTCCAGAAAAAGAGAAAGATGCTGCAAATATGATATGCATTTCCCTGAAGCTAATTTTTGGGAAGATCTAGAATCAAAAATAATGGAATGCATCAGAAATACACTGGATAGGCGTGTACAATTTTATGAAGATGAGATACGGAAGCTCAGTGAACAGCGTCTCATGCCAGTCTGGAACTTCTGTAATTTTTTCATTTTGAAGGAAAGTTTGGCTTTTATGTTTGAAATGGCGCATCTTCATGAAGATGCCTTACGGGAATATGATGAACTAGAACTCTGCTATCTTGAAACAGTTAACATGACTGGAAAGAAAAGAGAATTTGGTGGGGCAGACCACGGGGATGATCAGGCAGCAATTGTTAATCCAGGAAACAAAGCATTGACGCAGATTGTCCAAGAGGATTCGTTTAGGGAGTTCGAGTTCAGACAGTATCTGTTTGCCTGTCAATCAAAGCTCTTATTCAAGCTAAATCGACCTATTGAGGTAGCATCACGAGGTTATTCGTTCATATTAAGCTTCTCAAAATCCTTGGCATTGAACGAGCGTATTCTTCCTTTTTGTATGCGTGAAGTCTGGGTGATAACTGCTTGCTTGGCTTTAATTGAAGCAACCACTTCCAACTATAGTGATGGACTTGTGGCACCTGACGCAGAGAAGGAGTTCTTTTGTCTTCTTGGTGACCTATATTCTTTAGCCAGAGTTAAGTTCATGAGGCTAGCGTATTTAATTGGGTATGGTACTGATATAGAAAGAAGTCCTGTCAACAGTGCTTCCCTCAGCTTGCTACCTTGGCCTAAGCCAGCTGTTTGGCCTTCAGTCCCTGCTGATGCATCAGCAGAGGTGCTTGAGAAAGAAAAGTTGATTCTTCAAACAACTCCTAGAATCAAGCACTTTGGTATCCAGAGGAAACCCCTGCCCCTTGAACCAACTGTGCTACTACGAGAGGCTAACAGACGGAGGGCTTCACTTTCCGCTGGAAATGTGTTTGAAATGTTTGACAGTCGCCAGGGTCCAATGGAAGGATCAGGTTTTGATTCACCCACCAAGATGTCACCACAAAAAGTACTCTCGAATTCGATGACACGCACTAATTCTTCTCCGGGAAACTTTGATAGCTCAATTGGCCGACCTATGAGGCTTGCTGAGATATATATTGCTGCCGAACATGCTTTGAAGCAAACAATTTCTAATCTTGCGATGTTAAAATCATTATCATCATCCGAGGAGTTTGAGAAAAAATATCTAGAGCTAACTAAAGGTGCTGCTGACAATTACCACCGTTCCTGGTGGAAAAGACATGGAGTTGTCCTTGATGGTGAGATAGCTGCTGTTGCCTTTAAACATGGACATTTTGACCAAGCTGCAAAGTCATATGAGAAGGTTTGTGCACTGTATAATGGGGAAGGATGGCAGGAATTGTTGGCAGAGGTCCTTCCCATTCTAGCAGAGTGTCAAAATATTCTCAATGATCAAGCTGGCTACTTGCTATCATGTGTGCGGCTACTTTCTCTTGAAGATGGATTATTTTTGACGAAGGAGCGTCAAGCTTTTCAAGCAGAATTGATTCGTCTTGCTCATAGTGAAATGAAAGACCCTGTACCTCTTGATGTATCATCCTTAATTACATTTTCTGGAAATCCTGGACCTCCATTAGAGTTATGTGACAGGGATCCTGGTATCCTTTCAGTAACTGTCTGTAGTGGTTTTCCAGATGATATAACTCTTGATTCAATCAGTCTTACATTAATGGCAACATATAATGCAGACGAAGGTGTAAAGGCATTGAAGAGTTCTACAACTATTGTGTTACACCCTGGTCGGAATACTATTACCTTGGATCTACCACCTCAGAAACCAGGATCATATGTTCTTGGAGTTCTTACTGGGCAGATTGGGCAGTTGAGGTTTAGATCTCATGGTGTTTCAAAACTTGGTCCTGCAGAGAGTGATGATGTTATGAGTTATGAAAAGCCGGCTAAACCTATTTTGAAGGTTTCCAAACCTAGAGCACTTGTGGATCTTGATGCTGCTGTTTCATCTGCTTTGTTAATAAATGAACATCAATGGGTTGGTATTTTAGTTCGGCCGTTAAATTACTCCCTCAAGGCTGCTGTCTTGCATATTGATACTGGTCCAGGATTGGAGATTGAAGAGACAAACATAGTTGAGATGGAAAGCTATGCTGGATTGGAGATTGAAGAGACAAACATAGTTGAGATGGAAAGCTATGCTGGTGTATCAGAGAATGATGAGGATGAGGCGCAGAAAGATGGTGCTCAGATAGAATCTTTGAATTCTGAGAAAAAGTTTGAACGATCAACTCTTCATGATGGTAAAATAGTGTTTCCGAATTGGGCAAGCGACACTCCTTCTATACTCTGGGTTCTAATTCGTGCCATCAGTGACACACTCAACAGAGGATCATCTTCAGTCACAACAAGGAGAGAGAGTATTGTAGATGGAATGAGAACAATAGCTCTGAAACTTGAATTTGGAGCATTTCACAATCAAATATTTGAAAGGACCCTAGCAGTGCATTTTACACATCCTCTCTATGTGAGGACACATGTTACTGATAAATGCAATGATGGTACCTTGCTTCTGCAGGTAATACTTCACTCTGAAATAAAGGCTACATTGACCATATACGATGCTTGGCTTGATCTTCAAAACGGATTTGTTCATTCTGGACAAACTGAGGGTAGACCCACTTCAAGCTTCTTCCCACTAATCATATCTCCCACTTCCAAAGCAGGAATTTTGTTTAGTATCTTCCTAGACAAGACAACTGCAGAAGAAGACATGAAGCAACCAGAAAGCATACTAAATATCAAATATGGAATTTCTGGTGATAGAACAATTGGAGCCCATCCTCCATTTATAAATGAATCTACTGGAGTTGATGGTGCTAGACAGGAGCTGATCTTCAAGAGTGTAATTATTTTGCAAAGGCCCGTGCTTGATCCATGCCTAGCCGTTGGTTTTCTTCCTCTCCCTTCAGATGGCCTGAGAGTTGGACAACTAATTAAGATGCAATGGAGGGTGGAAAGGTTGAAGGATTTGAATGAGAAAGAAATTTCTGAACAGAATGATGAGGTGCTGTATGAGGTAAATGCAAATTCTGGAAATTGGATGATCGCTGGAAGGAAAAGAGGGCATGTATCTCTCTCCAAAAATCAAGGTGCAAGGATAATTATCACAGTATTATGCATGCCTCTGGTGGCTGGTTATGTGCGTCCTCCACTACTTGGGCTGCCGGAAATCGACGAGGCAAATATAAGGTGCAAACCTTCTGGGCCACATCTAGTTTGTGTTTTGCCACCAACACTCAGCTCATCCTTCTGCATTCCAGTTAATTCATGA 3822 0.4194 MANFLAQFQTIKNSTDRLVISVEDVSDLWPTVKPAFEARLPFKRASLNNKARNPVLVEKLSAEFILTTDSRLRSRFPQEQLLFWFREPYATVVLVTCEDLDEFKTILKPRLKLIVQNDEREWFIVFVSKAHPANDQANKMAKKVYAKLEVDFSSRKRERCCKYDMHFPEANFWEDLESKIMECIRNTLDRRVQFYEDEIRKLSEQRLMPVWNFCNFFILKESLAFMFEMAHLHEDALREYDELELCYLETVNMTGKKREFGGADHGDDQAAIVNPGNKALTQIVQEDSFREFEFRQYLFACQSKLLFKLNRPIEVASRGYSFILSFSKSLALNERILPFCMREVWVITACLALIEATTSNYSDGLVAPDAEKEFFCLLGDLYSLARVKFMRLAYLIGYGTDIERSPVNSASLSLLPWPKPAVWPSVPADASAEVLEKEKLILQTTPRIKHFGIQRKPLPLEPTVLLREANRRRASLSAGNVFEMFDSRQGPMEGSGFDSPTKMSPQKVLSNSMTRTNSSPGNFDSSIGRPMRLAEIYIAAEHALKQTISNLAMLKSLSSSEEFEKKYLELTKGAADNYHRSWWKRHGVVLDGEIAAVAFKHGHFDQAAKSYEKVCALYNGEGWQELLAEVLPILAECQNILNDQAGYLLSCVRLLSLEDGLFLTKERQAFQAELIRLAHSEMKDPVPLDVSSLITFSGNPGPPLELCDRDPGILSVTVCSGFPDDITLDSISLTLMATYNADEGVKALKSSTTIVLHPGRNTITLDLPPQKPGSYVLGVLTGQIGQLRFRSHGVSKLGPAESDDVMSYEKPAKPILKVSKPRALVDLDAAVSSALLINEHQWVGILVRPLNYSLKAAVLHIDTGPGLEIEETNIVEMESYAGLEIEETNIVEMESYAGVSENDEDEAQKDGAQIESLNSEKKFERSTLHDGKIVFPNWASDTPSILWVLIRAISDTLNRGSSSVTTRRESIVDGMRTIALKLEFGAFHNQIFERTLAVHFTHPLYVRTHVTDKCNDGTLLLQVILHSEIKATLTIYDAWLDLQNGFVHSGQTEGRPTSSFFPLIISPTSKAGILFSIFLDKTTAEEDMKQPESILNIKYGISGDRTIGAHPPFINESTGVDGARQELIFKSVIILQRPVLDPCLAVGFLPLPSDGLRVGQLIKMQWRVERLKDLNEKEISEQNDEVLYEVNANSGNWMIAGRKRGHVSLSKNQGARIIITVLCMPLVAGYVRPPLLGLPEIDEANIRCKPSGPHLVCVLPPTLSSSFCIPVNS* 1274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5656 1273 PANTHER BNAC09G30770D PROTEIN 1 1271 - -
Psa5g5656 1273 Pfam Trafficking protein particle complex subunit 10, TRAPPC10 1155 1232 IPR022233 -
Psa5g5656 1273 PANTHER EPILEPSY HOLOPROSENCEPHALY CANDIDATE 1/TMEM1 1 1271 IPR045126 GO:0048193|GO:1990071
Psa5g5656 1273 Coils Coil 185 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5656 Psa-Chr5 491843188 491856381 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5656 K20307 - gmx:100787264 2241.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5656 5 491843188 491856381 Psa5g5656 5 491843188 491856381 ECH