Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5632 ATGGGAGATCGTCATAGAGCTCTTTCCTTTGATGAATTACCTTCATATTTGCTTTTGGAAATTATGTGTTCAGGGAAGCTCAGTGCTATTGACCTAATTTGTTTGGAATTTACTTCAAAAGCCTTTGGTGCTACTAATGGCTTGTGCCCTTCTAAATTTAACTCATTGGTAGACTATGCTGCATTTCAATTGTGTGGCTCTCATGCCATCTTTTGTAAGATGAGTTTGAATTCTCAAAAGGAGTTGTATGATCGATGCGGCGGAAAGTGGAAGCGGGTTTTGAGGTTCTTGCAGTCTGTGGAACAAGCCTCTGGTGTGGTTGAGACACCATCAGGAAGTATGCAAATAACAACAGGAAAGTATCACACCTTAGCGATCAGCAACTCCTCGGTCTATTCATGCGGTTCTAGCTTGTGTGGTGCACTTGGTCAAGGCTCTGAAACAACACAGCTTCCAGCATTGGCCCAAATCGACTTCCCACCTCTGGCACGTGTCGCACATGTGTCGGCCTCCTATAACCATGCAGCTTTTGTTATGCAATCTGGAGAGGTGTTCACGTGTGGAGATAATTCGTATTTCTGCTGTGGTCATAGAGATACAAATCGAGCAATTTTCAGGCCACGTCTTGTTGAATCCTTAACGGGGATTCCTTGCAAGCAGGTTTCAACAGGGCTAAACTTCACCGTCTTCCTCACTAGGCAAGGTCATGTGTATACTTGCGGAAACAACTCGCACGGCCAACTTGGTCTTGGCGACACTCAGGACAGACCAATAGCCAAAATGGTTGAAGTCCTCGCTAACATAGGCCCTGTTGTTCAGGTTGCAGCCGGATCAAACTATATCTTATCTGTAACAGAAGATGGATCAGTATACTCCTTTGGATCAGGTTCTAATTTCTGTCTCGGTCACGGTAGTCAACACGACGAGTTGTTTCCTCGTTGCATACAGAAATTTAGAAGAAAAGGTATTCATGTTGTCCGCGTATCTGCTGGGGACGAGCATGCAACCGCACTTGATTCAAATGGAATTGTATATACATGGGGTAAGGGATATTGTGGTGCTTTAGGCCATGGTGATGAGATTGAGAAGACAAGACCAGAGATCTTGTCTAGTCTCAAGAATCACGTGGCCGTTCAGGTGTGTGCAAGAAAGAGAAAAACCTTTATTCTACTTGAATCAGGTTTGGTTTACGCATTTGGTTCGATGGGATTTGGCAGCCTAGGATTTTTAGACAGAAGAGTAAATGACAAAATCTTAAAGCCAAGACTGTTAACCACATTGAGATCTTTCCATGTTTCTCAAATCAGCACTGGCCTTTACCACACTGTGGTTGTCACTAACGATGGCCAAATATTTGGGTTTGGTGACAATGAAAGAGCTCAGCTGGGTCATGATTCTTTGAGAGAATGCACTGAACCAACTGAGATTTTCATAGAAAAATCAAATGAAGATTATGATTCTATTTATTAA 1470 0.4313 MGDRHRALSFDELPSYLLLEIMCSGKLSAIDLICLEFTSKAFGATNGLCPSKFNSLVDYAAFQLCGSHAIFCKMSLNSQKELYDRCGGKWKRVLRFLQSVEQASGVVETPSGSMQITTGKYHTLAISNSSVYSCGSSLCGALGQGSETTQLPALAQIDFPPLARVAHVSASYNHAAFVMQSGEVFTCGDNSYFCCGHRDTNRAIFRPRLVESLTGIPCKQVSTGLNFTVFLTRQGHVYTCGNNSHGQLGLGDTQDRPIAKMVEVLANIGPVVQVAAGSNYILSVTEDGSVYSFGSGSNFCLGHGSQHDELFPRCIQKFRRKGIHVVRVSAGDEHATALDSNGIVYTWGKGYCGALGHGDEIEKTRPEILSSLKNHVAVQVCARKRKTFILLESGLVYAFGSMGFGSLGFLDRRVNDKILKPRLLTTLRSFHVSQISTGLYHTVVVTNDGQIFGFGDNERAQLGHDSLRECTEPTEIFIEKSNEDYDSIY* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5632 489 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 288 341 IPR000408 -
Psa5g5632 489 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 235 287 IPR000408 -
Psa5g5632 489 SUPERFAMILY RCC1/BLIP-II 107 410 IPR009091 -
Psa5g5632 489 Pfam Regulator of chromosome condensation (RCC1) repeat 432 460 - -
Psa5g5632 489 PRINTS Chromosome condensation regulator RCC1 signature 289 305 IPR000408 -
Psa5g5632 489 PRINTS Chromosome condensation regulator RCC1 signature 325 338 IPR000408 -
Psa5g5632 489 PRINTS Chromosome condensation regulator RCC1 signature 344 360 IPR000408 -
Psa5g5632 489 PRINTS Chromosome condensation regulator RCC1 signature 435 451 IPR000408 -
Psa5g5632 489 PRINTS Chromosome condensation regulator RCC1 signature 451 465 IPR000408 -
Psa5g5632 489 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 342 393 IPR000408 -
Psa5g5632 489 SUPERFAMILY RCC1/BLIP-II 378 477 IPR009091 -
Psa5g5632 489 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 9 478 - -
Psa5g5632 489 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 182 234 IPR000408 -
Psa5g5632 489 Gene3D - 97 268 IPR009091 -
Psa5g5632 489 Gene3D - 269 488 IPR009091 -
Psa5g5632 489 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 394 448 IPR000408 -
Psa5g5632 489 Pfam Regulator of chromosome condensation (RCC1) repeat 181 231 IPR000408 -
Psa5g5632 489 Pfam Regulator of chromosome condensation (RCC1) repeat 235 280 IPR000408 -
Psa5g5632 489 Pfam Regulator of chromosome condensation (RCC1) repeat 287 338 IPR000408 -
Psa5g5632 489 Pfam Regulator of chromosome condensation (RCC1) repeat 341 382 IPR000408 -
Psa5g5632 489 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 435 445 IPR000408 -
Psa5g5632 489 PANTHER BNAA01G28890D PROTEIN 9 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5632 Psa-Chr5 490305190 490311029 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5632 - - gmx:100782653 786.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5632 5 490305190 490311029 Psa5g5632 5 490305190 490311029 ECH