Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5620 ATGAGGGCTTCTTTGGGTGCTGTAATTGGTAGGTACCCATCAAGTGATGGAACTATCCACATGGGTGGAAATGGGATCATAAAGCATAACAGAAAATGCAGAGACATAGCTGTTCTTGTCATCTTCATTGCATTCTGGGTTGCCATGATTGTTAACTCTAGCTTTGCTTTCAACAAAGGAAACCCATTAAGGCTTACTTTTGGTTTAGACTACAAAGGAAATGTTTGTGGGGATAAGCATGCAGGACTTCATGAGTTGGAGCTCAAGTACTGGCTAAACCCTAATCAGGTTTATCAAAGTGGATTAAAGGATAGTCAGTTTAAACTCGCTGATGCTCGCAGTATATGCTTGTTGGATTGTCCTACTCCTTCTGAAGAGTCACTTACTTGGGTTTGTGATTATCCTGAAGGAGATATTCGTGTTTCAATGAATGATTGGATTGATATGAACTATGATTATTATGATTTGCTCACGCCAGAAATGAAAAACTCGTCTGTTCAACTTCAAGGCCCTTGTTATCCCGTCATATTTCCTAGTGTAAATGTTTACTGGAGTTGCCAATTCATTGCTAGAGCATCAAATGTGTCTTTAAAGCATTGGCAGCAGTTGGGTGGAGTTAACATCAATGAAGACACTGTCATTGATAAGTCCATTCACCGATATATCAATTCTCACTCGGCTATCTTAAAGAGATACATGGCTGACATAGGAAAGACTTGGCCTGTCCTGATTGTTTGTGGTGCGATTTTACCTTTGTTTCTCTCTGTCATTTGGCTGCTGATGATCCGGCATTTTGTTTCTGCAATGCCTTGGATAACGGTGGTTTTCTTTGATCTTCTAATAGTATCAGTTACAATGTTCTACTACCTAAAAGTTGGATGGATAGGAAATGACACGATAACACCCATCATTGGGGAGCATGATCCTTACATTCATATATATGGAAGGGAGCTGACTCATCTACGTGTTGTCACTATCCTCATGACTTTTATAATGGTTGTTTCCGTTCTTACATCAATCGCTATTATTCGGCGCATCCTTATGGCAACTTCTGTCCTTAAGGTTGCAGCAAAAGTGATAGGAGAAGTTCAAGCACTTATTGTTTTCCCAATCATACCATTCGGTATCCTTGCAGTGTTCTACATGTTATGGATTTCGGTTTTTCTCAATTTATTCAGCTCTGGTCAGGTTGTTCAGAATGACTGCCACTCTAACTGCTGTTCATATAGCCTCATGGAAAAGAGGGTAATCTGTGATCGTTGTTGCGGATATAGCATCCATTACACACCACATATTGGAGTTGCTATCCTCTTTCACCTGTTTGGTTGTTATTGGGTTACACAATTTCTCATTGCATGCTCATCAACGGTGATTGCCGGATCTGTCGCCTCTTATTATTGGGGACGTGGCGAAGCATCACCAGAAATTCCTTTTATTTCTGTCTTTTCCTCCATGAAGAGGCTTATACGATACAGTCTTGGTTCTCTTGCTCTTGGCTCTTTGACTGTATCATTTGTAGAATCAATCCGCTTCCTGCTCGAATCTATTCGCCGCAAACTGAAAGTCTCCAGTCATGCACCTGACAACTGGTTCGGGAAGGCTGCATACCAATCATCTCAATTTTTTCTCATGTGTATCGAGTGGACCATCAAATCAATTAACCGAAATGCTTATATCATGATTGCTATAACCGGTAAAAGTTTCTTTGGAGCTTCATCGATTGCAACAAATTTGATCAAGAATAACATCTTACGGATTGGTCGTGTCAATGTGATCGGAGACGTTATCTTATTCCTCGGAAAACTATGTGTCAGCCTATCGAGTGCTGTTTTCGCTTTTCTCATGTTAGACACTCACAAATACAAATCAGCGCATAACAAGATTTCATCTCCGTTCTTCCCTGTCATGGTTTGCTGGGCTCTTGGATATATCGTTGCGACACTTTTCTTTGGAGTTATAGAGATGTCGATTGACACCATCATTCTCTCATTCTGTCAGGATTCTGAAGAGCATGGAACAGCACAATATGCTCCTCCCCTTCTCATTGAAACTCTCAGTGACCAAAATGAAATGCAAAGATTTGCGCAAGGATCGCATTAA 2100 0.4067 MRASLGAVIGRYPSSDGTIHMGGNGIIKHNRKCRDIAVLVIFIAFWVAMIVNSSFAFNKGNPLRLTFGLDYKGNVCGDKHAGLHELELKYWLNPNQVYQSGLKDSQFKLADARSICLLDCPTPSEESLTWVCDYPEGDIRVSMNDWIDMNYDYYDLLTPEMKNSSVQLQGPCYPVIFPSVNVYWSCQFIARASNVSLKHWQQLGGVNINEDTVIDKSIHRYINSHSAILKRYMADIGKTWPVLIVCGAILPLFLSVIWLLMIRHFVSAMPWITVVFFDLLIVSVTMFYYLKVGWIGNDTITPIIGEHDPYIHIYGRELTHLRVVTILMTFIMVVSVLTSIAIIRRILMATSVLKVAAKVIGEVQALIVFPIIPFGILAVFYMLWISVFLNLFSSGQVVQNDCHSNCCSYSLMEKRVICDRCCGYSIHYTPHIGVAILFHLFGCYWVTQFLIACSSTVIAGSVASYYWGRGEASPEIPFISVFSSMKRLIRYSLGSLALGSLTVSFVESIRFLLESIRRKLKVSSHAPDNWFGKAAYQSSQFFLMCIEWTIKSINRNAYIMIAITGKSFFGASSIATNLIKNNILRIGRVNVIGDVILFLGKLCVSLSSAVFAFLMLDTHKYKSAHNKISSPFFPVMVCWALGYIVATLFFGVIEMSIDTIILSFCQDSEEHGTAQYAPPLLIETLSDQNEMQRFAQGSH* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5620 699 Pfam Plasma-membrane choline transporter 326 669 IPR007603 GO:0022857|GO:0055085
Psa5g5620 699 PANTHER PLASMA-MEMBRANE CHOLINE TRANSPORTER FAMILY PROTEIN 3 695 - -
Psa5g5620 699 PANTHER CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) 3 695 IPR007603 GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5620 Psa-Chr5 489667793 489672083 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5620 K15377 - gmx:100789185 1236.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5620 5 489667793 489672083 Psa5g5620 5 489667793 489672083 ECH