Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5617 ATGGACCCTGATGTTCTTGAAATTCCTCCTCCAATTTTCAAACACCCTCGTAGGTTCAAAAAACAGAAACAGTCCATCATCTATGATGTGATTGACATTGTCGACGACAATGAGAATGACGATGATGATTTGATGATACTTGGTGAAATAACTCATAAGCATAGCAAGGGGAAGGCAGCTGAAGCCCTTCGTGAGGGTTATGGCGATAATCATCAAGTTGCGCGTGTTTTGGAAAAAAGTGGAAACGTTAGTGGGATTGGGTCTTCTAATGGTCATGATCTCCGTGGTTCTCATCGATCGTTTGACAATGGTGACTACCTTGGTTTGCGTTCGGATGAATATATAGATGTAGACGAGTATGTCTTATTACAGGGAGCGGGTAGTAGCGGTTCATTCCATTCAAATTTTGTTGGACATGACGGATCATTGCATCCTTCTGGAGTAGAATCGGGATACCTTTGGTCGAATAGTTCTTATAGCTTCAATGCCACTCCTAAGCATGTGTGTGGTTCTACTAGTGCTCTCAAATCTGCAAGAGATGTACATAATGGAGCAGCTGTTGCTCTCCCACAATTGACAATAATTGATGAAACTGAAAATGAAACTCTGAGGAAACTTCGAAGTTTTAAGCAATTTGATACTGTCATTGACACTTCGGATCATCACTTTATTAATCATTATTCCTCCACAAAGCAGAATCCGAAGAGTTGGGCTAAACAAATCCAGGAAGAGTGGAAGATTTTGGAGAAGCATTTGCCGGATACAATATTTGTGAGAGTCTACGAATCAAGGATGGATCTCATGAGGGCTGTGATTATTGGAGCAGAAGGGACTCCTTACCACGACGGTCTTTTCTTTTTTGATATTTTCTTTCCCAGTGGCTATCCTAATGTACCCCCGAACGTGCATTACCACTCTGGAGGTCTTCGGCTCAACCCTAATTTGTATAACTGCGGCAAAGTATGTCTCAGTCTACTTAACACCTGGTCTGGCACCACGAAGGAGAGATGGACTAAAGGTGTTTCAACAATGCTACAAGTTCTAGTCTCCATACAAGGGCTAATCTTGAACACAATGCCTTACTACAACGAACCTGGATATGAATCTTTGAGGGGTACACCAAACGGTGAAACGCAGGCCCGACAGTATAATCAAAATACATTCATTCTATCGTTGAGGACAATGATGTATACAATAAGAAAGCCTCCAAAGAATTTTGAAGATTTAGTTGCCGGGCATTTCTACAGCCGAGCGCATGATATTCTGGCGTCATGCAAAGCATACGAAAAAGGTGTTCAAGTTGGTTGTTTGGTCAAAGGTGGGGTTCGAGATGTTGATGGGAGTAACGGAAAAAACTGCCCAGCTAAATTTAAGTCTGGTTTAGTTGAATGTGTGCCTTCTCTTATAAAAGAGTTTGAAAATGTTGGAGTTAAGGACTGTGAGAAATTCACGTCTCAGGTACGACGCAGTACCACCAGCAGAAAGTGA 1488 0.42 MDPDVLEIPPPIFKHPRRFKKQKQSIIYDVIDIVDDNENDDDDLMILGEITHKHSKGKAAEALREGYGDNHQVARVLEKSGNVSGIGSSNGHDLRGSHRSFDNGDYLGLRSDEYIDVDEYVLLQGAGSSGSFHSNFVGHDGSLHPSGVESGYLWSNSSYSFNATPKHVCGSTSALKSARDVHNGAAVALPQLTIIDETENETLRKLRSFKQFDTVIDTSDHHFINHYSSTKQNPKSWAKQIQEEWKILEKHLPDTIFVRVYESRMDLMRAVIIGAEGTPYHDGLFFFDIFFPSGYPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWSGTTKERWTKGVSTMLQVLVSIQGLILNTMPYYNEPGYESLRGTPNGETQARQYNQNTFILSLRTMMYTIRKPPKNFEDLVAGHFYSRAHDILASCKAYEKGVQVGCLVKGGVRDVDGSNGKNCPAKFKSGLVECVPSLIKEFENVGVKDCEKFTSQVRRSTTSRK* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5617 495 Gene3D Ubiquitin Conjugating Enzyme 194 470 IPR016135 -
Psa5g5617 495 CDD UBCc 239 365 IPR000608 -
Psa5g5617 495 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 39-RELATED 9 486 - -
Psa5g5617 495 Pfam Ubiquitin-conjugating enzyme 241 385 IPR000608 -
Psa5g5617 495 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 236 396 IPR000608 -
Psa5g5617 495 SUPERFAMILY UBC-like 221 403 IPR016135 -
Psa5g5617 495 SMART ubc_7 239 396 - -
Psa5g5617 495 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 9 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5617 Psa-Chr5 489610784 489613853 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5617 195 480 Miscellaneous Gene Families AT2G33770 50.694 1.68e-88 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5617 K10581 - ccaj:109805727 481.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5617 5 489610784 489613853 Psa5g5617 5 489610784 489613853 ECH