Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5560 ATGGCAGCAGCGATTGGTTTAAACGGAGTAAAGGTGGGGACGACGTCGTCTCAGGCGTATCTGGATGGGAAGACAGTCAAGGAGACGAAAGCTCTGCTGGCGGAACTGTGTCGCCACTTCTACGGTTTGGGATGGGTTTCAGGAACTGGTGGCAGCATCAGCATCAAAGTCCATGATGATTCCATTCCCAAACCTCAACAACTCATTCTCATGTCTCCTTCTGCTGTTCAGAAGGAAAGAATGGAACCAGAGGATATGTATGTGTTGTCTGAGAATGGGTCAGTTTTGTCTGCCCCATCTCCCAAACCTTACCCACATAAGCCTCCCAAGTGTACTGACTGTGATACACTTTTCATGAAGGCATATGAAAAGCGTGATGCTGGGGCTATTATCCATAGTCATGGGATAGAGTCTTGCCTTGTAACAATGATCAATCCTTTTTCAAAGGAATTCCGAATTACTCACATGGAGATGATAAAAGGGATTAAGGGGCATGGTTATTATGATGAACTAGTGGTCCCGATAATTGATAACACAGCCCATGAACATCAACTCACAGAATCTTTTGCTAAAGCAATTGAAGACTACCCAAAAACAACAGCTGTGCTTGTTCGGAACCATGGGATATTTGTTTGGGGAGACTCGTGGATCAGTGCTAAAACTCAGTCTGAGTGTTACCATTACCTCTTTGATGCTGCTATCAAACTTCATCAAATGGGATTGGACTGGTCGACTCCAAATCATGGTCCGATACAAAGTGCACGGAGGGGTTTAAGTATTGCTGGGGAGTCAAATTTGTCCACAAAGGCAAGGAAAGATAATGGCGACATTGGTCCATATCCACGTTGCATTGTTCTTGACATTGAAGGAACTACTACTCCCATATCATTTGTTTCAGAGGTTCTCTTTCCGTATGCCCGTGATAATGTTGGGAGGCATCTTTCTGCAACATACGATACTTCTGAAACTAAAGCTGATATCAAATTGCTTCGCTCACAAGTTGAAAGTGACCTTGAACAAGGGATTGCAGGTGCTGTGCCTATCCCCTCAGATGATGCTGGGAAAAATGAAGTCATTTCTGCTATAGTTGCTAATGTGGATGCTATGATCAAAGCGGATAGAAAGATCACTGCCTTAAAAGAGTTGCAGGGTCATATATGGCAAACTGGTTATGCGACTAACGAATTGGAAGGAATAGTTTTTGACGATGTACCTGAAGCTCTAGAAAAGTGGAATGCCTTGGGCATAAAGGTGTACATATATTCTAGTGGCAGCAGATTGGCGCAAAGGCTAATATTTGGAAAAACAAACTTTGGGGACCTAAGAAAGTTTCTATCTGGGTTTTTTGACACCACAGTGGGGAACAAAAAAGAGGCGCGGAGTTATGTTGAAATTTCTCAGTCACTTGGTGTGGATAAGCCATCAGATATTTTATTTGTCACTGATGTATATCAAGAAGCTACAGCTGCAAAGGCAGCAGGTATGAGCATTTTTTTCAAATCTTAA 1506 0.4296 MAAAIGLNGVKVGTTSSQAYLDGKTVKETKALLAELCRHFYGLGWVSGTGGSISIKVHDDSIPKPQQLILMSPSAVQKERMEPEDMYVLSENGSVLSAPSPKPYPHKPPKCTDCDTLFMKAYEKRDAGAIIHSHGIESCLVTMINPFSKEFRITHMEMIKGIKGHGYYDELVVPIIDNTAHEHQLTESFAKAIEDYPKTTAVLVRNHGIFVWGDSWISAKTQSECYHYLFDAAIKLHQMGLDWSTPNHGPIQSARRGLSIAGESNLSTKARKDNGDIGPYPRCIVLDIEGTTTPISFVSEVLFPYARDNVGRHLSATYDTSETKADIKLLRSQVESDLEQGIAGAVPIPSDDAGKNEVISAIVANVDAMIKADRKITALKELQGHIWQTGYATNELEGIVFDDVPEALEKWNALGIKVYIYSSGSRLAQRLIFGKTNFGDLRKFLSGFFDTTVGNKKEARSYVEISQSLGVDKPSDILFVTDVYQEATAAKAAGMSIFFKS* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5560 501 Gene3D - 390 500 IPR023214 -
Psa5g5560 501 TIGRFAM enolase-ppase: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 282 497 IPR023943 GO:0000287|GO:0019509|GO:0043874
Psa5g5560 501 PANTHER METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE 2 497 IPR017714 GO:0005737|GO:0019509|GO:0046872
Psa5g5560 501 Pfam Class II Aldolase and Adducin N-terminal domain 32 233 IPR001303 -
Psa5g5560 501 TIGRFAM salvage_mtnB: methylthioribulose-1-phosphate dehydratase 33 238 IPR017714 GO:0005737|GO:0019509|GO:0046872
Psa5g5560 501 SUPERFAMILY AraD/HMP-PK domain-like 27 248 IPR036409 -
Psa5g5560 501 SUPERFAMILY HAD-like 282 498 IPR036412 -
Psa5g5560 501 SFLD Haloacid Dehalogenase 282 498 - -
Psa5g5560 501 PANTHER BIFUNCTIONAL METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE/ENOLASE-PHOSPHATASE E1-RELATED 2 497 - -
Psa5g5560 501 CDD HAD_EP 283 496 IPR023943 GO:0000287|GO:0019509|GO:0043874
Psa5g5560 501 Gene3D - 26 250 IPR036409 -
Psa5g5560 501 SMART Aldolase_II_2 31 234 IPR001303 -
Psa5g5560 501 Hamap Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1. 18 501 IPR027505 -
Psa5g5560 501 Pfam haloacid dehalogenase-like hydrolase 282 494 - -
Psa5g5560 501 Hamap Methylthioribulose-1-phosphate dehydratase [APIP]. 18 242 IPR027514 GO:0005737|GO:0019509|GO:0046872
Psa5g5560 501 SFLD enolase-phosphatase 282 498 IPR023943 GO:0000287|GO:0019509|GO:0043874
Psa5g5560 501 Gene3D - 295 389 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5560 K16054 - gmx:100796209 892.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5560 5 486117443 486124425 Psa5g5560 5 486117443 486124425 ECH