Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5531 ATGAGAAACATTAAGATATCATCACTCATCATTTTTCTCTTTCTTTCTATACTATCACTTGATGTTCAATGCCGTTCTCTTCCCAATAAACTGGTCTCTAATGGAGTTGATAATGTTGAATCCTCGGAAGAAGATTCTTTGCTGCTTCTTAATAATGAAGGGGAGTATTGTAGGCAAATGTATGGTTTTTTGCCATGTTCTAATAACATATTAGGCCATTTGTTTCTGATTTTGGTTTATGAGTACTTGTTGTTCCATGGAGAATCATATTTGGCTGCTGGAGGTGAACAGGTTTTCAAGATTCTTGGTCCTGGTGTTTTTGGTGCTAGTGCTTTTGATATTCTTGGTGCCCTTCCAGAGTCTTTGATTCTTCTTGTCACTGGACTTTCAAGTGATAAGGAGAGGGCACAAGAATCTGCTTCCACTGGTGTTGGTTTGTTAGCAGGATCATCCATCTTGCTTCTCACTGTACTATGGGGAACTTGTGTTATTGTTGGCAAGCAAGATTTGAAAAATGAATCTAATTCTCATTGCTCATATTCATCATCAGGAAGAATAAAACAATCTTTGATTGGTTATGGCATTACTATGGACGTAGACACTAGAAAGATGGCAAGAAATATGGTTTTTTCTGTTATACCACTCCTCATAATGCAGATTCCCTCATTATTTCATTTCTCTACATCGTCGCGCAATTTCACCTTGATGATTTCTCTCATCATTGCGGTCTCTTTTCTCATCTCATACTTCATTTACCAGATCTTTAAACCGCAGATAGAGAAAACAAGGCTAGAATACATAAAGCATGATGATTTAATATTGAGAATTTTCCAACGCGTTGAAAAACAAACTCTTCAAAAGATCTTAGCTGAGGACGGAACTCCGAACGTAACTGCCATAAGCGGGTTGTATAACGAATTCAGTCAACGTGGGGGAAAGGACTTATTAGCTTCTGAAGTAAAAGAGCTTCTGCTCGGAAACAATTTAACCAACACGAACATCAGAGATGAACAGATAGAAGACATGGTAAAAGCTTTTGACAAAAATGGTGACCAAATCATATCAAGGGAAGAATTTGTTGATGGCTTAAAAGAATACATTAACCAAACTAAACATGCTTTGGATAGAAAATATCTACCGAAAGAGTCTATGAACAAAATGTATCAGACGTTTATTAAGCCGTGGATTGAAAACGTGAGAAAAGAACGCGAATTGAAGGGACGTCTTATTTCTGAAGTTTTAAGTCATGCTCAGAGTGATATGGTTGGTAAGCTGCGCAATGAAGACGGTACACCAGATAAAGAAGCTATCAAAAGGTTGTTTGAGGAAGTTAATATCGATGGCGATGACCATGTTTCGAGAACCGAGTTAGAAAAAATAGTGAAGGACATTCATATTGGTCCGGGTGTAGATTCAGAAGAAGCAGTCACAAAACTACTTCAAGATCTTGATGTCAACAAAGACAATGAAATCAGTGAGAATGAATTTGTGGATGGTTTCACCAAATGGATTAGCTCAAATTCCAACAAAACTTCTACCTCAAAATCTTCTCAACATCATCATGAAACTCATCAAACATGGGAAGATGTTGAGAAGGTAATGGAAGAGAATCAATCCAAAGGAGTTTCTGCATGGTTTGAAGCTATAGCATATTTGGTGTTGGGAATTACTATGCTGTCACTTCTTGCAGAGCCTCTAATAGCAAGTGTTCAAAAATTCTCCGAAGCCGCGGGAATTTCATCGTTTTTCATCTCATTTATTTTAGTCCCTTTGGCTACAAATTTCAGAGAAGCAACATCAGCAATCAAAGAAGCTAGTCACAAGAAAAGTAGTAATACTTCTCACACAATGTATGAGATTTATGGAGCAGTGTTCATGAACAACATTCTTGGTTTTGTGGTGATATCTATACTTATATATATGAGAGATATTACTTGGGAATTTTCAGCTGATGTATTGGTGGTGGCCATTGTTTGTGCTGTGATGGGTTTAGCTTCGGCTTTTCGTACCACTTTTCCTCTTTGGACATCCTTTCCTGCATACCTCTTGTACCTAATATCTTTGCTTTTGGTTTATGTTCTCAAAGATATTCTCAATTATATGTAG 2106 0.3723 MRNIKISSLIIFLFLSILSLDVQCRSLPNKLVSNGVDNVESSEEDSLLLLNNEGEYCRQMYGFLPCSNNILGHLFLILVYEYLLFHGESYLAAGGEQVFKILGPGVFGASAFDILGALPESLILLVTGLSSDKERAQESASTGVGLLAGSSILLLTVLWGTCVIVGKQDLKNESNSHCSYSSSGRIKQSLIGYGITMDVDTRKMARNMVFSVIPLLIMQIPSLFHFSTSSRNFTLMISLIIAVSFLISYFIYQIFKPQIEKTRLEYIKHDDLILRIFQRVEKQTLQKILAEDGTPNVTAISGLYNEFSQRGGKDLLASEVKELLLGNNLTNTNIRDEQIEDMVKAFDKNGDQIISREEFVDGLKEYINQTKHALDRKYLPKESMNKMYQTFIKPWIENVRKERELKGRLISEVLSHAQSDMVGKLRNEDGTPDKEAIKRLFEEVNIDGDDHVSRTELEKIVKDIHIGPGVDSEEAVTKLLQDLDVNKDNEISENEFVDGFTKWISSNSNKTSTSKSSQHHHETHQTWEDVEKVMEENQSKGVSAWFEAIAYLVLGITMLSLLAEPLIASVQKFSEAAGISSFFISFILVPLATNFREATSAIKEASHKKSSNTSHTMYEIYGAVFMNNILGFVVISILIYMRDITWEFSADVLVVAIVCAVMGLASAFRTTFPLWTSFPAYLLYLISLLLVYVLKDILNYM* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5531 701 CDD EFh 437 501 IPR002048 GO:0005509
Psa5g5531 701 SMART efh_1 436 464 IPR002048 GO:0005509
Psa5g5531 701 SMART efh_1 475 503 IPR002048 GO:0005509
Psa5g5531 701 SMART efh_1 338 366 IPR002048 GO:0005509
Psa5g5531 701 Gene3D - 365 516 - -
Psa5g5531 701 SUPERFAMILY EF-hand 323 507 IPR011992 -
Psa5g5531 701 Pfam EF-hand domain pair 435 498 IPR002048 GO:0005509
Psa5g5531 701 ProSitePatterns EF-hand calcium-binding domain. 484 496 IPR018247 -
Psa5g5531 701 ProSiteProfiles EF-hand calcium-binding domain profile. 334 369 IPR002048 GO:0005509
Psa5g5531 701 ProSiteProfiles EF-hand calcium-binding domain profile. 471 506 IPR002048 GO:0005509
Psa5g5531 701 ProSiteProfiles EF-hand calcium-binding domain profile. 432 467 IPR002048 GO:0005509
Psa5g5531 701 ProSitePatterns EF-hand calcium-binding domain. 347 359 IPR018247 -
Psa5g5531 701 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 9 381 - -
Psa5g5531 701 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 543 700 - -
Psa5g5531 701 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 387 515 - -
Psa5g5531 701 Gene3D - 298 364 - -
Psa5g5531 701 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 9 381 - -
Psa5g5531 701 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 543 700 - -
Psa5g5531 701 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 387 515 - -
Psa5g5531 701 Pfam Sodium/calcium exchanger protein 549 692 IPR004837 GO:0016021|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5531 Psa-Chr5 479495786 479500290 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5531 387 694 EF-hand Containing Proteins AT1G53210 39.385 1.83e-57 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5531 - - gmx:100799062 1038.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5531 5 479495786 479500290 Psa5g5531 5 479495786 479500290 ECH