Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5524 ATGTCTCTCTCTTTCACTTCCCCTCCACGTTCTCGCTCTCGCTCTCGCTCCACTTCCAACCACACACTCTTCCGCTTCCTCTTCATCGCTATAGCCGCAATCCTCTGCACTCACGCCCACGCTCGTTTCGTCTCGCACGATCTGCTTTCCGATGGATCCGATTTCAGTGTTCTTCGACTCCCCACAGATCCCGCTGTTGAATCCGCCTGCGAGCAGACCTACGGTTTCTTACCCTGCACCACCACCGTCCTTGGGAACTTGTTTCTCATTATAGTTTATGGATTTCTCATGTACACCGCCGCTACTTTCTTGTCCAACGGTAGCGAACTCTTGCTTGAGATCTTGGGTCCCGGCATTGTTGGAGGGTTGTTTCTTCCTATCCTTGGTGCTCTCCCTGATGCCATGCTCATTCTCGTGTCTGGGCTTTCTGGAAGTGCAGAAGTTGCTCAAAGTCAGGTAGCTGTTGGAATGGGACTGCTAGCTGGATCAACGGTGCTGCTTCTTACTATAATATGGGGGACTTGTGTGATTGTAGGCAAGTGTGACATTGAGGATTCAATTGCACTAGATTCAACAGACACCAGAGGATTCAGTCTAACTGGTTCTGGTATTAGTACGGATATTTGGACAAGTTATGCTGCAAGGATTATGGTTATATCTGTCATTCCATTTGTGATTGTTCAACTACCACAAATGCTCAATTCAACTTCTGGAAGGCACTTGGCTGTTTTGATTGGTCTTGTTATTTCCGTCTGCTTATTGATATCGTATTGCCTTTACCAAATTTTCCAACCTTGGATACAAAAACGAAAATTGGAATATATCAAACATAAGCATGTTATTTTGGGGCTTCTGAGACATTTGAAGATGCGTTCATTGGGAAAGCTTCTGAAAGATAATGGCGAACCCGATACAGATGTAATTAGAAAGTTATTTGCAACAATTGATGAAAATAAAGATGGACATCTTACTCATGGTGAAATGACAGCACTGGTTGTTGGAATTCAGTTCGAGGAGATTGACCTGGACCATGACGACGCTGTAACAAGAATAATGGCGGATTTTGATACTTCTCGTAATCAACTTATTGACGAAGCAGAGTTTGTTAATGGAGTCTCCAGATGGCTTCAAGGGGCCAAGCGTTCTAAAGTTCAAGGTGGTGATGCTGGTGCACACACTGTAAAGTTTTTAAGTGATTTTCATACAGAAACAAAGCGGGAACACGATCTTCTGGATGTTGGGGGTCAGGGTGATGAAGCCACTGAAGTTGTTGAGAATGCTACATGGATTTCCATCAAAGCGGGACTGCTGCTGCTACTAGGCGCCCTTATCGCCGCTGCATTTGCCGACCCTCTGGTTGGTGCGGTCGATGACTTCTCTACTGCTACAAATATTCCAGCATTCTTCATTTCCTTCATTTTTCTACCTCTAGCAACCAATTCAAGTGAAGCTGTATCAGCAATAATTTTTGCTAGTCGTGATAAGAGGCAAACAGCATCATTAACATTTTCCGAGATATACGGTGCAGTAACAATGAACAATGTGCTATGCTTATCGGTCTTCTTGGCGCTCGTATACGTGAGGGGATTGACATGGGACTTTTCTTCAGAAGTGCTGGTTATTCTCATCGTCTGCGTTGTCATGGGTGTGTTCGCCAGTTTCCGTACTGTTTTCCCTCTATGGACATCAATACTGGCTATCCTCCTCTATCCATTCTCCTTGGCATTGGTCTATGTTCTTGATTATGTATTTGGGTGGTCATAG 1764 0.4467 MSLSFTSPPRSRSRSRSTSNHTLFRFLFIAIAAILCTHAHARFVSHDLLSDGSDFSVLRLPTDPAVESACEQTYGFLPCTTTVLGNLFLIIVYGFLMYTAATFLSNGSELLLEILGPGIVGGLFLPILGALPDAMLILVSGLSGSAEVAQSQVAVGMGLLAGSTVLLLTIIWGTCVIVGKCDIEDSIALDSTDTRGFSLTGSGISTDIWTSYAARIMVISVIPFVIVQLPQMLNSTSGRHLAVLIGLVISVCLLISYCLYQIFQPWIQKRKLEYIKHKHVILGLLRHLKMRSLGKLLKDNGEPDTDVIRKLFATIDENKDGHLTHGEMTALVVGIQFEEIDLDHDDAVTRIMADFDTSRNQLIDEAEFVNGVSRWLQGAKRSKVQGGDAGAHTVKFLSDFHTETKREHDLLDVGGQGDEATEVVENATWISIKAGLLLLLGALIAAAFADPLVGAVDDFSTATNIPAFFISFIFLPLATNSSEAVSAIIFASRDKRQTASLTFSEIYGAVTMNNVLCLSVFLALVYVRGLTWDFSSEVLVILIVCVVMGVFASFRTVFPLWTSILAILLYPFSLALVYVLDYVFGWS* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5524 587 ProSitePatterns EF-hand calcium-binding domain. 356 368 IPR018247 -
Psa5g5524 587 ProSiteProfiles EF-hand calcium-binding domain profile. 303 338 IPR002048 GO:0005509
Psa5g5524 587 Pfam EF-hand domain pair 306 370 IPR002048 GO:0005509
Psa5g5524 587 Pfam Sodium/calcium exchanger protein 88 264 IPR004837 GO:0016021|GO:0055085
Psa5g5524 587 Pfam Sodium/calcium exchanger protein 436 578 IPR004837 GO:0016021|GO:0055085
Psa5g5524 587 Gene3D - 422 580 IPR044880 -
Psa5g5524 587 Gene3D - 285 407 - -
Psa5g5524 587 SMART efh_1 307 335 IPR002048 GO:0005509
Psa5g5524 587 SMART efh_1 347 375 IPR002048 GO:0005509
Psa5g5524 587 ProSitePatterns EF-hand calcium-binding domain. 316 328 IPR018247 -
Psa5g5524 587 PANTHER SODIUM/CALCIUM EXCHANGER NCL 33 584 - -
Psa5g5524 587 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 33 584 IPR004713 GO:0006812|GO:0008324|GO:0016021
Psa5g5524 587 SUPERFAMILY EF-hand 302 377 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5524 Psa-Chr5 478872131 478875747 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5524 39 587 EF-hand Containing Proteins AT1G53210 67.254 0.0 742
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5524 - - gmx:100809896 909.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5524 5 478872131 478875747 Psa5g5524 5 478872131 478875747 ECH