Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5322 ATGTCGGACTACTCCTATAGCCCTATCTCTCTATGTTTGACAAGCCACATACTTGGGTGCATATCCTCTATTGGTGACTATTGGACTATCCTTTTTAAGGATTGTAACAGTACAGACAAAGGATACTCATTTTATGAGTTCAGGAGAAATTCAAGATCAGTAAAATCAACAATTCTTCATTTTCAGTTGAGGAATTTGGTTTGGGCTACATCAAAGCATGATGTATACCTTATGTCTCAGTTCTCAGTAACACATTGGTCTTCTTTGACTTGCACAAGGTCTGAAGTACTCAATGTTTCAGGACATGTTGCACCATCAGAGAAACATCCTGGAAGTCTATTGGAAGGATTCACACACACTCAAGTTAGTACACTTGCAGTAAAAGATAATCTTCTAGTTGCTGGAGGATTTCAGGGTGAACTTATTTGCAAGCACCTAGACCGACCTGGTGTCAGCTTTTGCTCAAGGACTACTTATGATGATAACGCTATCACCAATGCCATTGAGATTTATGCTTCTCCTAGTGGGGCAGTTCATTTCACAGCATCAAATAATGATTGTGGAATCAGAAACTTTGATATGGAGAAGTTTCAACTCTCTAAGCATTTTCGTTTTCCCTGGCCAGTGAATCATACTTCTCTCAGTCCAGATGGTAAGCTACTTCTGATTGTTGGAGACAATCCTGAAAGCATGTTGGTGGACTCTCAAAATGGAAAGACTATTGCTCCATTATCTGGGCACTTAGATTTTTCATTTGCATCATCATGGAATCCTGATGGCGTGACCTTTGCTACTGGAAACCAGGACAAAACCTGTAGGATTTGGGACATGCGAAACTTATCCAAGTCAGTGGCAGTGTTGAAGGGAAATCTCGGAGCTATCCGTTCAATCCGACATTCTTCTGACGGCAAGTATATGGCTATAGCCGAGCCTGCAGATTTTGTCCATGTATATGATGTGAAAAGTGGGTATGAGAAAGAACAGGAAATCGATTTCTTCGGTGAGATATCCGGCATATCTTTCAGTCCAGACACCGAATCCCTTTTCATCGGGGTTTGGGATCGTACATATGGCAGCCTTCTTGAATATGGCCGACGTCATAATTACTCATACGCTGACCTAATGATTTAG 1131 0.4129 MSDYSYSPISLCLTSHILGCISSIGDYWTILFKDCNSTDKGYSFYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSQFSVTHWSSLTCTRSEVLNVSGHVAPSEKHPGSLLEGFTHTQVSTLAVKDNLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAIEIYASPSGAVHFTASNNDCGIRNFDMEKFQLSKHFRFPWPVNHTSLSPDGKLLLIVGDNPESMLVDSQNGKTIAPLSGHLDFSFASSWNPDGVTFATGNQDKTCRIWDMRNLSKSVAVLKGNLGAIRSIRHSSDGKYMAIAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRRHNYSYADLMI* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5322 376 Gene3D - 165 373 IPR015943 GO:0005515
Psa5g5322 376 Pfam WD domain, G-beta repeat 239 276 IPR001680 GO:0005515
Psa5g5322 376 SUPERFAMILY WD40 repeat-like 66 356 IPR036322 GO:0005515
Psa5g5322 376 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 244 279 - -
Psa5g5322 376 SMART WD40_4 237 276 IPR001680 GO:0005515
Psa5g5322 376 SMART WD40_4 280 319 IPR001680 GO:0005515
Psa5g5322 376 SMART WD40_4 196 234 IPR001680 GO:0005515
Psa5g5322 376 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 33 374 - -
Psa5g5322 376 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 33 374 - -
Psa5g5322 376 ProSiteProfiles Trp-Asp (WD) repeats profile. 244 285 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5322 Psa-Chr5 464397137 464403676 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5322 232 356 Miscellaneous Gene Families AT5G08390 26.400 1.08e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5322 - - mtr:MTR_3g010010 696.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5322 5 464397137 464403676 Psa5g5322 5 464397137 464403676 ECH