Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4616 ATGTTAAACCTCATCCGTCGCAAAAACATTCCCATCACTTCCACTTTCTCTCCACTCTATTTCTCTTCAAACTCCATCAAAAACACTAACACAAACAACATCCTCCAAATCCTAACAAACCCCAAAAACAACACCAACATCACAAAAGCCACGTCACTCACCAAACAACACCTTCAAAACTCAAACAAACCCACAAACACATGTTTCTCTCTTTTCCACGCGCTCAATTCCAACCACACCACCACGCCCCGCTCATTCGAAATTCTCATACTCGCACTCTGTCAACTATCTCTCATCCAAGAAGCCCATTGGGTTTTCAACAACCTTAACCCTAATCTACCTCCCTTACGCGCCTGCAACGCGCTTCTTCATTCGTTAGTCAAGACGGGGAAGTATGATTCCGTGTGGCAGGTCTATAACAACATGATCTCGCACGGGCTTTCACCTACTGTCATCACGTATGGGGTTCTATTGAATTGTTGCTGCAACCAGGGTGATTTGAGCAATGCCCGTAACGTGTTTGATGAAATGCTTCAAAGAAGAATTGAACCCAATGTGGTGGTTTACACTATTCTCATTCGTGTTTTTTGTAATGAGGGTGAAATGGAAGAAGCGGAGAGGGTTTTTAAGTTGATGAGAGAAACTGGTGTGGATCCTAATTTGTATACTTATGTTACTCTCATTGATGGGTATTGCAAAATGGGTAATGTTAAACGTGTTTTTGAATTGTATAGTGATATGCTATGGAATGGTTTGCATCCTGATGTTGTGACTTTTGCTAATTTAGTGGATGTTTTGTGCAAGGCGGGTGATTTGAAGACTGCACGAAACTGCTTTGTTTATATGGATAAGTTTGGTGTTTTTCCTAATTCGCGTGTTTATAATGGTTTGATTGATGGATACTGTAAGGCAGGGGATTTGGTTGAAGCTAGGCGATTGCGAGATGAAATGAAACGGAATGGGATTTTCTGGGATGTTTTTACGTGCAGTATACTTGTTAAGGGTTTGTGTGACTTGGGTAAGTTTGAAGAATCTAAGGATTTGATGGAGGAGATGGGAAAAGCAGGGGTTTTTGCTAATGCTGTGACTTACAACGTGTTGATTGATGGATACTGCAAAATGGGGGATATGGAGAAGGCTATTGAGGTTTGTTCACAAATGACTGAGAGGAAGGTAGATCCCAATGAGATCACATTTTCTACATTGATTGATGGGTTTTGCAAGATTGGTAACATAAAAGCTGCTATGGGGTTATATACAGAAATGGTTATCAAAGGTCTTGTGCCTGATGTGGTGACTTACACGACTTTGATTGATGGACATTGCAAGGATGGGAACAGCAAAGTAGCTTTCGAACTGCATAAGGAGATGCTGAACGCAGGACTAACGCCAAATGTGGTCACAATTACTTCTTTGATTGACGGCCTTTTGAAAGATGGAAGGACTTACGCCGCAATCAGATTTTTCTTGGAGAAAACTGGAGTTGGTTTTGCTGGATATAAAATGGATCATAGTGAGTCGTGTTCTCCGAATGATGTTATGTATGCTGTTTTAATTCAAGGTTTATGTAAAGATGGACATGTTTTCAAGGCCACCAAGTTTTTCAAAGAAATGAGATGCAGTGGTTTCAAACCAGACATGGTTCTTTATGTAATCATGTTGGAGGCACATTTTCGATTCAAGCACATGGTTGATGTAACGATGTTGCATGCAGACATGCTGAAGATGGGTGTTCTGAGAAATACTTCCATATGCCGTGCATTGTCTACGGGCTATAGAGAATTGAGATTTGAAGCCAGCTCGAATGTGTTCTGA 1815 0.4105 MLNLIRRKNIPITSTFSPLYFSSNSIKNTNTNNILQILTNPKNNTNITKATSLTKQHLQNSNKPTNTCFSLFHALNSNHTTTPRSFEILILALCQLSLIQEAHWVFNNLNPNLPPLRACNALLHSLVKTGKYDSVWQVYNNMISHGLSPTVITYGVLLNCCCNQGDLSNARNVFDEMLQRRIEPNVVVYTILIRVFCNEGEMEEAERVFKLMRETGVDPNLYTYVTLIDGYCKMGNVKRVFELYSDMLWNGLHPDVVTFANLVDVLCKAGDLKTARNCFVYMDKFGVFPNSRVYNGLIDGYCKAGDLVEARRLRDEMKRNGIFWDVFTCSILVKGLCDLGKFEESKDLMEEMGKAGVFANAVTYNVLIDGYCKMGDMEKAIEVCSQMTERKVDPNEITFSTLIDGFCKIGNIKAAMGLYTEMVIKGLVPDVVTYTTLIDGHCKDGNSKVAFELHKEMLNAGLTPNVVTITSLIDGLLKDGRTYAAIRFFLEKTGVGFAGYKMDHSESCSPNDVMYAVLIQGLCKDGHVFKATKFFKEMRCSGFKPDMVLYVIMLEAHFRFKHMVDVTMLHADMLKMGVLRNTSICRALSTGYRELRFEASSNVF* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4616 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 220 254 IPR002885 -
Psa5g4616 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 290 324 IPR002885 -
Psa5g4616 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 325 359 IPR002885 -
Psa5g4616 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 430 464 IPR002885 -
Psa5g4616 604 Pfam PPR repeat family 429 478 IPR002885 -
Psa5g4616 604 Pfam PPR repeat family 118 163 IPR002885 -
Psa5g4616 604 Pfam PPR repeat family 289 338 IPR002885 -
Psa5g4616 604 Pfam PPR repeat family 360 408 IPR002885 -
Psa5g4616 604 Pfam PPR repeat family 184 233 IPR002885 -
Psa5g4616 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 360 394 IPR002885 -
Psa5g4616 604 Gene3D Tetratricopeptide repeat domain 284 353 IPR011990 GO:0005515
Psa5g4616 604 Gene3D Tetratricopeptide repeat domain 354 423 IPR011990 GO:0005515
Psa5g4616 604 Gene3D Tetratricopeptide repeat domain 424 495 IPR011990 GO:0005515
Psa5g4616 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 150 184 IPR002885 -
Psa5g4616 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 255 289 IPR002885 -
Psa5g4616 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 395 429 IPR002885 -
Psa5g4616 604 PANTHER ATPASE EXPRESSION PROTEIN 3 31 594 - -
Psa5g4616 604 Pfam PPR repeat 507 539 IPR002885 -
Psa5g4616 604 Pfam PPR repeat 250 282 IPR002885 -
Psa5g4616 604 SUPERFAMILY TPR-like 63 279 IPR011990 GO:0005515
Psa5g4616 604 TIGRFAM PPR: pentatricopeptide repeat domain 257 290 IPR002885 -
Psa5g4616 604 TIGRFAM PPR: pentatricopeptide repeat domain 118 151 IPR002885 -
Psa5g4616 604 TIGRFAM PPR: pentatricopeptide repeat domain 152 186 IPR002885 -
Psa5g4616 604 TIGRFAM PPR: pentatricopeptide repeat domain 397 431 IPR002885 -
Psa5g4616 604 TIGRFAM PPR: pentatricopeptide repeat domain 222 256 IPR002885 -
Psa5g4616 604 TIGRFAM PPR: pentatricopeptide repeat domain 362 396 IPR002885 -
Psa5g4616 604 TIGRFAM PPR: pentatricopeptide repeat domain 432 466 IPR002885 -
Psa5g4616 604 TIGRFAM PPR: pentatricopeptide repeat domain 327 360 IPR002885 -
Psa5g4616 604 TIGRFAM PPR: pentatricopeptide repeat domain 513 546 IPR002885 -
Psa5g4616 604 TIGRFAM PPR: pentatricopeptide repeat domain 187 220 IPR002885 -
Psa5g4616 604 TIGRFAM PPR: pentatricopeptide repeat domain 293 325 IPR002885 -
Psa5g4616 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 115 149 IPR002885 -
Psa5g4616 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 185 219 IPR002885 -
Psa5g4616 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 511 545 IPR002885 -
Psa5g4616 604 Gene3D Tetratricopeptide repeat domain 167 283 IPR011990 GO:0005515
Psa5g4616 604 PANTHER OSJNBA0060P14.6 PROTEIN 31 594 - -
Psa5g4616 604 Gene3D Tetratricopeptide repeat domain 500 601 IPR011990 GO:0005515
Psa5g4616 604 Gene3D Tetratricopeptide repeat domain 27 166 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4616 23 604 Glycosyltransferase AT1G05670 28.235 6.97e-77 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4616 - - lja:Lj1g3v0525420.1 743.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g4616 5 408493884 408496780 Psa5g4616 5 408493884 408496780 ECH