Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4615 ATGACACACTTGAAACGTTTCAACTCTCTGCTTCAAAGGAGTGAGAGAAAGTTGGTTTATGTTCCCATATCCATGTGTCATATCAAAGCCCAGTTTCACAATAATAACCTTAAACAACCAAATCCTAACCAAACCCTTAAGAAATTCCTTGAATGCAACAACCATACTAAGGTGCTTCTACTCTTCAGAACCTTCTTAAGAAAAAAATCATCCACTTTCAACTCCATTGATAGTTTTTCTTGCCTGTTTGCCCTTAAAGCATGTATCAACAAAAAACATTCCTCTATCCAAGGAAAACAATTGCATGCCCTCATCATGAAATTTGGATATGAATCCATAATTCAACTCCAAACATCCCTTTTAAAGGTGTATGCTGAAGGGGGAAACTTATTTGATGCACACCATGTGTTCGAGGAAATACCCGCAAAGAATATTATTTGTTGGACATCATTGATTTCTGCTTATGTTGGAAATCAAAAACCCAACAAAGGTTTGGAACTGTTTAGACTGATGCTGACGAACAACGTGGAACCGGATCAAGTCGTTGTGACGGTTGCTCTCTCGGCTTGTGCTGATACCGGGGGACTTGAAATGGGTGAATGGATTCATGATTTTGTTCGACGTAAACAAGGGATGAAGACAGATTTGTGTTTGAGTAATGCGCTTATAAATATGTATGCTAAATGTGGTGATATTGTAAATGCAAGGAAGTTGTTTGATAGCACAAGAAACAAAGATGTCACAACTTGGACTTCTATGATTGTAGGGCATGCACTACATGGCCAAGCACATGAAGCTCTTCAGCTTTTCTTCCAAATGAACACAAAGGGGGATATGACAAAATCGAGTTCATCTAATTTTATTGTATCTCCGAACGATGTAACGTTCATTGGAGTTTTAATGGCTTGCAGCCATGCAGGATTGGTTGAGGAAGGAAAACGCCATTTCAGAAGTATGACAGAAGAGTATGGTATACAACCAAGAGAGCCTCACTTTGGCTGCATGGTGGATCTCTTATGCCGTGGCGGGCACCTGAGAGATGCTTACGACTTCATTAATGAGATGCCAGCAGATCCGAATGCGGTAATCTGGCGAACCTTGCTTGGGGCATGTAGCCTCCATGGTGATTTAGAGCTAGCTACAGAAGTTCGGCATAAGCTACTTAACTTGGATCCTGGCTATGTTGGTGATAGTGTTGCTATGTCAAATATTTATGCGGATAGAGATATGTGGAATAAAAAGATTATTGTTAGGAATCAGATTAAACAGTCAAGAACTCCTGGCTACAGCTCAATCGAGACGGGAAGAGTTGCTGATCAATTTATAACTTCAAATGATAATGTTCCTGATATATCATGTTCTTGA 1365 0.3985 MTHLKRFNSLLQRSERKLVYVPISMCHIKAQFHNNNLKQPNPNQTLKKFLECNNHTKVLLLFRTFLRKKSSTFNSIDSFSCLFALKACINKKHSSIQGKQLHALIMKFGYESIIQLQTSLLKVYAEGGNLFDAHHVFEEIPAKNIICWTSLISAYVGNQKPNKGLELFRLMLTNNVEPDQVVVTVALSACADTGGLEMGEWIHDFVRRKQGMKTDLCLSNALINMYAKCGDIVNARKLFDSTRNKDVTTWTSMIVGHALHGQAHEALQLFFQMNTKGDMTKSSSSNFIVSPNDVTFIGVLMACSHAGLVEEGKRHFRSMTEEYGIQPREPHFGCMVDLLCRGGHLRDAYDFINEMPADPNAVIWRTLLGACSLHGDLELATEVRHKLLNLDPGYVGDSVAMSNIYADRDMWNKKIIVRNQIKQSRTPGYSSIETGRVADQFITSNDNVPDISCS* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4615 454 Gene3D Tetratricopeptide repeat domain 62 197 IPR011990 GO:0005515
Psa5g4615 454 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 114 446 - -
Psa5g4615 454 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 37 173 - -
Psa5g4615 454 Pfam PPR repeat family 143 191 IPR002885 -
Psa5g4615 454 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 246 280 IPR002885 -
Psa5g4615 454 TIGRFAM PPR: pentatricopeptide repeat domain 146 179 IPR002885 -
Psa5g4615 454 TIGRFAM PPR: pentatricopeptide repeat domain 249 275 IPR002885 -
Psa5g4615 454 Pfam PPR repeat 362 387 IPR002885 -
Psa5g4615 454 Pfam PPR repeat 294 321 IPR002885 -
Psa5g4615 454 Pfam PPR repeat 249 277 IPR002885 -
Psa5g4615 454 Pfam PPR repeat 332 356 IPR002885 -
Psa5g4615 454 Pfam PPR repeat 220 242 IPR002885 -
Psa5g4615 454 Gene3D Tetratricopeptide repeat domain 198 282 IPR011990 GO:0005515
Psa5g4615 454 Gene3D Tetratricopeptide repeat domain 283 432 IPR011990 GO:0005515
Psa5g4615 454 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 144 178 IPR002885 -
Psa5g4615 454 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 114 446 - -
Psa5g4615 454 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 37 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4615 Psa-Chr5 408492023 408493825 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4615 52 450 Glycoside Hydrolase AT3G49170 34.328 2.46e-70 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4615 - - lang:109327537 660.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g4615 5 408492023 408493825 Psa5g4615 5 408492023 408493825 ECH