Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4172 ATGAGAAGGAGACCTGGAATCGGAGGGTTACAAACAGCTGCTGCTGCAAGGGATCAGTATCGGTTGTTGGGTGAGAATGTAGCAAAGATCAGAACTGATATGATGAAGGAACAGCTTTCCACGTTTCGTTCTCAGCTTGAAGATTTTGCTCGCAAGCATAAGAATGACATCCGCAAGAACCCTGCATTCAGATCACAGTTTCATGAGATGTGTGCTAAGGTTGGAGTAGATCCCTTGGCCTCAAATAAGGGATTTTGGGCCGAGCTGTTGGGAATTGGTGATTTTTATTATGAACTTGGAGTTCAAATAGTGGACATTTGCTTGGCTACTAGACCCCTCAATGGTGGTTTAATCAACCTGCAGGAACTGTGTAATCTCCTTCGCCAGAGACGGAAAAGTGACAGAGGAGTTGTTTCTGAGGATGATTGCCTGCGCGCTATCGGTAAACTGAAGGTTCTAGGTAGCGGGTTTGAAGTTATTTCTGTTGGAAAGAAAAAACTTGTTCGTTCAGTTCCAACTGAGCTGAATAAAGACCATAACGAAATTCTAGAACTTGCCCAGGGTCAAGGGTTTGTGACTGTCGATCAAGTAGAAAAGCGGCTATCTTGGACTTCGGGCCGTGCCATTGATGCACTTGATACATTACTTGATGACGGACTTGCAATGATTGATGATGGCCACAAAGATGGAAAACGGCGGTACTGGTTTCCGTGTGTATCACCAATTTCGTCTTTGACAGGAACTGATTCCATGTAA 756 0.4458 MRRRPGIGGLQTAAAARDQYRLLGENVAKIRTDMMKEQLSTFRSQLEDFARKHKNDIRKNPAFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVDICLATRPLNGGLINLQELCNLLRQRRKSDRGVVSEDDCLRAIGKLKVLGSGFEVISVGKKKLVRSVPTELNKDHNEILELAQGQGFVTVDQVEKRLSWTSGRAIDALDTLLDDGLAMIDDGHKDGKRRYWFPCVSPISSLTGTDSM* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4172 251 PIRSF ESCRT2_Vps22 1 245 IPR016689 GO:0000814|GO:0071985
Psa5g4172 251 SUPERFAMILY "Winged helix" DNA-binding domain 175 238 IPR036390 -
Psa5g4172 251 SUPERFAMILY "Winged helix" DNA-binding domain 24 174 IPR036390 -
Psa5g4172 251 Gene3D - 172 250 IPR036388 -
Psa5g4172 251 Pfam EAP30/Vps36 family 6 225 IPR040608 -
Psa5g4172 251 Gene3D - 24 85 - -
Psa5g4172 251 Gene3D - 91 171 IPR036388 -
Psa5g4172 251 PANTHER EAP30 SUBUNIT OF ELL COMPLEX 1 241 IPR016689 GO:0000814|GO:0071985
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4172 K12188 - rcu:8282922 456.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g4172 5 330679012 330685177 Psa5g4172 5 330679012 330685177 ECH