Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4170 ATGGGTTACAGAAACAAGAGCTTGGTGACAAAGGATCAAACTATTTCTTCATCTTCAAATTGTGAATCACTGAGTGATGCAATGCTCGTTTTCACTATGAATATCATTGGTTTACCAGTTGATGTTCACGTTAAAGATGGTTCTGTGTTTTCTGGAATTTTCTATACTGCTTCTGTTGATGACCGTTTCGGTATTGTTTTGAAGCAAGCAAGGATGACCAAGAAGGGAATTGGTCACAGCAATGTTGGAAAAGAGGCCTTGATAGATACACTAGTGGTTCAATCAAAGGATCTTGTGCAGGTCATTGCTAAGGGAGTAACACTTCCCGGGGATGGTGATAATGGAAAAATAACTGGCGAGGATGAGGAAGCAGTTACACCCAAAGTTTGTTGTTCCGAGAACCGTTCAGTGGATGCAGAACAGGTTAATCAATCAAGACAAGCTGGAGATAACAACTCAAAAGGGAAGGCTGATGACTGCAGGCAGAAGTTTGAATTTCACAGTGAAAAAAATGATGAAAAGATTCAAAGCCTTGATTCAGGCCATGAAATTATTACATGTCTGGGCCAAGTTAAAGCTGATAAAGCCAATGATCAGGGTAGTGAAAGGTCTACTTCACCAGATTCTACATCTACACATTCCACCCTTAGTGAAGATCTCAGTGAGGCGTCACATAATATTCCAGCAAAAATTATTGAAAAATCTGCTCCAAGGGGTGCAGATTGTACCAGAAATGCAAAGGAATTTAAGCTCAACCCAGCTGCCAAGATTTTCTCCCCGTCTTTTGTATATCCTATTTCAGCACCTTCTGCTGTGCCAACAGCTGCAAACATGGTTTACATGCCAAATAGCTCTCCAGCTCCAAATATGGTTTACATGCCAAATAGCTCTCCTCCAGTACATGTTGCTACTCTTCAACCTGAAGTCGGATTCAATAATTTTGCTTCTCGACCTTCTGTGCCTGTTAAGGTTTCACAGTATGGTAATTTGACAGTTGGAAATGCTGGCAGTGGTTCTCAATTTTCACAACCTATTGTTGGTCAACTGGCACATAGGACACAACCTCTTCAGTATGCTGCACATTACACTCCAGTCCTATCTGAACCTGCTTATTTGCAATCAAACTCTCCTGCTGATTTGGTACATGGTGTAACGGCTCCATTCCCAACCCGCCCCCTGTTGAATCACGTACAATTTCCAAAGCATCAAGGTGGAGCATTTAGTCAAGCAATACCAGTTGTTATGCCTCCATCTGTCATAACAAGTGCGCAACAACAAACCTTTGCATTTCAAAACCACATTCCAGTTTTGCAACCTGGCTTTTCTCCGCCTAGACCTATTTCAATCCCAGGATCAAATGGTTTCTATGGCACCAAATTTTCATGA 1386 0.417 MGYRNKSLVTKDQTISSSSNCESLSDAMLVFTMNIIGLPVDVHVKDGSVFSGIFYTASVDDRFGIVLKQARMTKKGIGHSNVGKEALIDTLVVQSKDLVQVIAKGVTLPGDGDNGKITGEDEEAVTPKVCCSENRSVDAEQVNQSRQAGDNNSKGKADDCRQKFEFHSEKNDEKIQSLDSGHEIITCLGQVKADKANDQGSERSTSPDSTSTHSTLSEDLSEASHNIPAKIIEKSAPRGADCTRNAKEFKLNPAAKIFSPSFVYPISAPSAVPTAANMVYMPNSSPAPNMVYMPNSSPPVHVATLQPEVGFNNFASRPSVPVKVSQYGNLTVGNAGSGSQFSQPIVGQLAHRTQPLQYAAHYTPVLSEPAYLQSNSPADLVHGVTAPFPTRPLLNHVQFPKHQGGAFSQAIPVVMPPSVITSAQQQTFAFQNHIPVLQPGFSPPRPISIPGSNGFYGTKFS* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4170 461 MobiDBLite consensus disorder prediction 136 151 - -
Psa5g4170 461 MobiDBLite consensus disorder prediction 202 222 - -
Psa5g4170 461 MobiDBLite consensus disorder prediction 192 239 - -
Psa5g4170 461 Pfam Ataxin 2 SM domain 26 104 IPR025852 -
Psa5g4170 461 PANTHER ATAXIN 2-RELATED 1 287 IPR045117 GO:0003723
Psa5g4170 461 PANTHER ATAXIN 2-RELATED 289 458 IPR045117 GO:0003723
Psa5g4170 461 MobiDBLite consensus disorder prediction 136 159 - -
Psa5g4170 461 PANTHER POLYADENYLATE-BINDING PROTEIN INTERACTING PROTEIN 289 458 - -
Psa5g4170 461 PANTHER POLYADENYLATE-BINDING PROTEIN INTERACTING PROTEIN 1 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4170 Psa-Chr5 330361887 330374248 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4170 - - gmx:100809285 506.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g4170 5 330361887 330374248 Psa5g4170 5 330361887 330374248 ECH