Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3989 ATGGTTATTTCAGACGAAGAAGTATCCGAAGCAATTCACTCATTGTTCAGAGAAACAAACCCTAGAACCAGAACTTTCACCACATTGAACCAAGTTGTTCAAGAGCTTCAATCCAAACTCGGTCACGATCTTACCCATAAGCTCGATTTTATCACTTCTCAGATCAATCTCCTTTTCGCTTCTCAACAACCACCTCCGCAACTTCCGCATAGGCAGTTACAACATCCACAACAACCACCACCGCAACAGCAACACCAACACCAACAAACTCAACAACTATGCTTTTCTGATAAAGACCATTTTACCCTTCACCAAAACCCTAATCCCTATTCTGTCCCTGTCACTTCGGTGTTTCGCAACAACACTGTTACTGCTGCTGGTACTGCTGATGATTCTACTGTTGCTCAACATCCTCCTCTTTCTCCCAATGTGGTTCCCAAGGAGAGTACACAACCTAAGCCAAAGAGAAGAGGTGGCCCAGGAGGTCTCAACAAACTTTGTGGGATATCGCCTGAACTTCAGGTCATTGTTGGCCAGCCGTCAATGACAAGGACTGAGATTGTGAAGCAACTGTGGGCGTACATAAAGAAAAACAATCTCCAAGATCCTAGCAATAAAAGGAAGATAATTTGCAACGATGAGCTGCGTATGGTGTTTGAGACTGACTGTACTGATATGTTCAAGATGAATAAGTTGCTGGCTAAACACATAATCACCCTTGAACCAACCAAAAAACCTGCTCCCAAGAAACAGAAGGTAGAAGTGGAGTTGGGAACAAGAAGTGCCGAACCTGCTCCTTCTGTAATTATATCTGATTCACTTGCTAACTTTTTTGGCGTTACTGGAAGGGAGATGCTACAGACAGAGGTTCTGAAACGTATCTGGGAGTACATAAAGGTCAATCATCTAGAGGATCCTGTGAATCCTTTGGCAATAATGTGTGATGCCAAGCTTAAGGAGATCTTTGGCTGTGAAAGCATTTCAGCGTTGGGGATACCTGAAGTTTTGGGCCGTCATCATATTTTTAGGAGATCATGA 1038 0.4345 MVISDEEVSEAIHSLFRETNPRTRTFTTLNQVVQELQSKLGHDLTHKLDFITSQINLLFASQQPPPQLPHRQLQHPQQPPPQQQHQHQQTQQLCFSDKDHFTLHQNPNPYSVPVTSVFRNNTVTAAGTADDSTVAQHPPLSPNVVPKESTQPKPKRRGGPGGLNKLCGISPELQVIVGQPSMTRTEIVKQLWAYIKKNNLQDPSNKRKIICNDELRMVFETDCTDMFKMNKLLAKHIITLEPTKKPAPKKQKVEVELGTRSAEPAPSVIISDSLANFFGVTGREMLQTEVLKRIWEYIKVNHLEDPVNPLAIMCDAKLKEIFGCESISALGIPEVLGRHHIFRRS* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3989 345 SMART swib_2 267 345 IPR019835 -
Psa5g3989 345 SMART swib_2 163 242 IPR019835 -
Psa5g3989 345 MobiDBLite consensus disorder prediction 64 92 - -
Psa5g3989 345 ProSiteProfiles SWIB/MDM2 domain profile. 263 342 IPR003121 -
Psa5g3989 345 MobiDBLite consensus disorder prediction 77 92 - -
Psa5g3989 345 PANTHER - 5 341 - -
Psa5g3989 345 SUPERFAMILY SWIB/MDM2 domain 160 244 IPR036885 -
Psa5g3989 345 Gene3D SWIB/MDM2 domain 260 344 IPR036885 -
Psa5g3989 345 Gene3D SWIB/MDM2 domain 158 247 IPR036885 -
Psa5g3989 345 SUPERFAMILY SWIB/MDM2 domain 265 340 IPR036885 -
Psa5g3989 345 Pfam DEK C terminal domain 4 59 IPR014876 -
Psa5g3989 345 CDD SWIB-MDM2_like 167 237 - -
Psa5g3989 345 Gene3D - 2 60 - -
Psa5g3989 345 CDD SWIB-MDM2_like 268 339 - -
Psa5g3989 345 MobiDBLite consensus disorder prediction 128 163 - -
Psa5g3989 345 MobiDBLite consensus disorder prediction 128 148 - -
Psa5g3989 345 Pfam SWIB/MDM2 domain 167 237 IPR003121 -
Psa5g3989 345 Pfam SWIB/MDM2 domain 269 339 IPR003121 -
Psa5g3989 345 ProSiteProfiles SWIB/MDM2 domain profile. 162 239 IPR003121 -
Psa5g3989 345 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 5 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3989 Psa-Chr5 314311539 314314869 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Psa5g3989 SWIB 3.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3989 K15223 - gmx:100801960 456.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g3989 5 314311539 314314869 Psa5g3989 5 314311539 314314869 ECH