Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3980 ATGGCTCTTCCTCATCTACTTCTTCTGCTTATTCTTCATTGCTCATTGTTTGTAGCATTGGTATCTGGCTGGAAGACATTGCAAGGATCACCACCGGTGGTAATAGCACGCGGCGGATTTTCGGGGTTATATCCAGATTCTAGTTTACTTTCTTATAACTTGGCACTAAAAACTATTTCCCCAAATGTGACTCTATGGTGTGACTTGCAACTGACAAAGGATGGAGTTGGGATATGTTTTCCAGACATCAAGCTTGACAATGCCACTGACATTTCTGTTGTTTACCCCGACAAAGCCAAGGAATACTCGGTTAATAAGGTTCCAATTCGCGGATGGTTTTCTGTTGATTACAGTTTCAATGAACTAGCAAATGTTTCGCTTGTTCAGGGAGTGTTTTCTCGAACGCCATCGTTTGATGGACGTAAGTCTCACATTATCCGTGTCGAAAACGTAGCTAAATTAGTAAAACCGCCATCAACAGGCCTATGGTTAAACGTTCAGCATGATAGATTCTACAAGCATCACAATTTGAGCGTAGAGAAACTTCTTCACTCGCTATCAACTAAACAAGTATCTATCAGTTACATCTCATCGCCGAACGCGAATTTCTTAAGAAGAGTAAGATCAAACTCAGGTCTTAAAAAAACCGTCACAATCTTCAGGTTTCTAGAGAAATATGAAATTGAACCCACAACCAACAAAACTTATGGCGCACTTGTGAAAGACCTCGAATTTATCAGAAGATTTGCTTCGGGAATTCTTGTTCCTAAAGGCTATATATGGCCTGTAGACTCGGAACTTTATCTACATAAACATACTTCTCTTGTCGCAGATGCTCATAAACAAGGGCTGAAAGTTTTTGTTTCAGACATTGTTAATGATGTTACATTCAGCTACAATTTCAGTTATGATCCTTTGGCTGAATGTCTGTCTTTCATCGACAACGGTAACTTCTCCGTTGATGGCATTCTGTCTGACTTTCCAGTAACTCCATCTGTAGCCATAAATTGCTTTTCTGGCGTACGAAGAAATGCAAAAAAACAAGTTGATACTTTGATTATATCGAAGTATGGAGCAAGCGGAGATTATCCTGCTTGTACTGATCTTGCGTATAAGAAAGCGAAATCAGATGGAGCAGATGTAATTGATTGTCCTGTTCAAATCTCCAAGGATGGAATACCCTTTTGCTTAAGTTCTATAGATCTTTCAACAACCACAACAGTGGCTCAATCAAAGTTCCGAACTCGCAAAACTATTATTCCAGAGATTCAAAAGGGAAGTGGCATATATACGTTTAGCTTGACATGGAACGAAATCAAAACATTGACTCCCGCGATATTGAAACCTTATGAGAAATACCTATTGTTCCGGAATCCAAAATTCAAAAATCAAGGGAAATTCCTAACCTTGTCTGAGTTTTTGTCCTTGGCTAAAGGCTCTGGCGTCTTGATCAACATAGAGAATGCAGCCTACCTTGCATCGAAGCGAGGACTAAACGTGACCAACGCAGTCCTTCATGCTCTACAAAAAGCTGGTTACAATAAACCAAGATCTCCAAAAGTAATGATTCAATCAACACACAGTTCGATACTAAAGATATTCAAGGATAAATCCAAATACGAAAGGGTTTACAAAGTTGACGAAAATATCCATGATGCTGACGATAAAGCTATCGAGGATATCAAAACATTTGCAGATTCTGTTGTGGTAAAAAAAGCTTCTGTCTTTACTCAAACTGCAGCATTTCTCGTTAACTCTACAACTACCGTAGCAAGGTTTCATTCATATAAGCTACCAGTTTATGTCGAAACTTTCAGCAACGAGTTTGTATCTCAAGCATGGGATTACTACTCAGATGCATTTTTTGAGATTAATTCATTCGTCATTGGAGCTAAGGTTAACGGCATTATTACTGACTTCCCTAAGACTGCTTCGCGATACACGAGGAACAAGTGTTTGAAGCATGGCAAAAGAGCACCTTATGTGAACCCTATTGAACCTGGAAAACTTTTAAGACAAATTTCTAAGTCATACCATTTAACACCTTCCCCTCCACTTCCAGTCTTGCATGATAGTAATGTCACAGAGCCACATCTGCCAAGTGTTTCTGGAAATTTTCCGATTTTTGGCGCTGCTCGTTAA 2142 0.3936 MALPHLLLLLILHCSLFVALVSGWKTLQGSPPVVIARGGFSGLYPDSSLLSYNLALKTISPNVTLWCDLQLTKDGVGICFPDIKLDNATDISVVYPDKAKEYSVNKVPIRGWFSVDYSFNELANVSLVQGVFSRTPSFDGRKSHIIRVENVAKLVKPPSTGLWLNVQHDRFYKHHNLSVEKLLHSLSTKQVSISYISSPNANFLRRVRSNSGLKKTVTIFRFLEKYEIEPTTNKTYGALVKDLEFIRRFASGILVPKGYIWPVDSELYLHKHTSLVADAHKQGLKVFVSDIVNDVTFSYNFSYDPLAECLSFIDNGNFSVDGILSDFPVTPSVAINCFSGVRRNAKKQVDTLIISKYGASGDYPACTDLAYKKAKSDGADVIDCPVQISKDGIPFCLSSIDLSTTTTVAQSKFRTRKTIIPEIQKGSGIYTFSLTWNEIKTLTPAILKPYEKYLLFRNPKFKNQGKFLTLSEFLSLAKGSGVLINIENAAYLASKRGLNVTNAVLHALQKAGYNKPRSPKVMIQSTHSSILKIFKDKSKYERVYKVDENIHDADDKAIEDIKTFADSVVVKKASVFTQTAAFLVNSTTTVARFHSYKLPVYVETFSNEFVSQAWDYYSDAFFEINSFVIGAKVNGIITDFPKTASRYTRNKCLKHGKRAPYVNPIEPGKLLRQISKSYHLTPSPPLPVLHDSNVTEPHLPSVSGNFPIFGAAR* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3980 713 Gene3D Phosphatidylinositol (PI) phosphodiesterase 350 648 IPR017946 GO:0006629|GO:0008081
Psa5g3980 713 Gene3D Phosphatidylinositol (PI) phosphodiesterase 31 332 IPR017946 GO:0006629|GO:0008081
Psa5g3980 713 SUPERFAMILY PLC-like phosphodiesterases 351 647 IPR017946 GO:0006629|GO:0008081
Psa5g3980 713 ProSiteProfiles GP-PDE domain profile. 32 335 IPR030395 GO:0006629|GO:0008081
Psa5g3980 713 Pfam Glycerophosphoryl diester phosphodiesterase family 39 288 IPR030395 GO:0006629|GO:0008081
Psa5g3980 713 Pfam Glycerophosphoryl diester phosphodiesterase family 358 643 IPR030395 GO:0006629|GO:0008081
Psa5g3980 713 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE FAMILY PROTEIN 1 712 - -
Psa5g3980 713 SUPERFAMILY PLC-like phosphodiesterases 31 330 IPR017946 GO:0006629|GO:0008081
Psa5g3980 713 CDD GDPD_SHV3_repeat_1 32 334 - -
Psa5g3980 713 ProSiteProfiles GP-PDE domain profile. 351 648 IPR030395 GO:0006629|GO:0008081
Psa5g3980 713 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 1 712 - -
Psa5g3980 713 CDD GDPD_SHV3_repeat_2 352 647 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3980 Psa-Chr5 313659342 313663875 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3980 6 707 Receptor kinase-like Gene Family AT4G26690 53.922 0.0 787
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3980 - - gmx:100799882 1011.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g3980 5 313659342 313663875 Psa5g3980 5 313659342 313663875 ECH